Sequence
atgc intronic sequence ATGC exonic sequencegtaccaatttgtatatgatttagtttatagtatagatggtaaaaccatagagtttgaaggatgctagtagttcataattacttttttttggtttgtgaagGATGCACAGGATCTTGGCATTTCTATTGAACTTCTTCCCTTGAGTCACCCTGATGAGGTGTTCAATGTATCTCAATTCTATGCT
Basic information
species | Glycine max |
transcript | GLYMA20G39280.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA20G39280.1 (Glycine max), 3'ss of exon 6
lower sequence: LOC_Os07g08729.1 (Oryza sativa), 3'ss of exon 6
--gtaccaatt---tgtatatgatttagtttatagtatag-atggtaaaaccatagagtttgaaggatgctagtagttcataattacttttttttggtttgtgaagGATGCACAGGATCTTGGCATTTCTATTGAACTTCTTCCCTTGAGTCACCCTGATGAGGTGTTCAATGTATCTCAATTCTATGCT
| || || |||||| | | || | | | | || | | | | | | | ||| | ||||| | || | || | |||||||||| ||||||||| | || |||||||||||||| |||||| || ||||||| |||||| | || | || |||||
gtatgcctatgacagatatatgttcaatttcgtgctgaatcacaacaacataccatgttcttagtggcctttgta-tcattaattgtctattgtc--ttcctacagGATGCACAAGATCTTGGCCTGTCCATTGAACTTCTTCCTTTGAGTAGGCCCGATGAGGAGTTCAACATGTCCCTGTTTTATGCA
upper sequence: GLYMA20G39280.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G414496_T05 (Zea mays), 3'ss of exon 6
-----------------------------------------------------------------------------------------gtaccaatttgtatatg-atttagtttatagtatagatggtaaaacca-tagagtttgaaggatgctagtag----ttcataattacttttttttggtttgtgaagGATGCACAGGATCTTGGCATTTCTATTGAACTTCTTCCCTTGAGTCACCCTGATGAGGTGTTCAATGTATCTCAATTCTATGCT
||| || | | | | || | ||| | | | ||| | | | || | | || || | || || | ||| ||| | |||||||||| ||||||||| | ||||||||||||||||| |||| | |||||||| |||||| | || | || |||||
gtgagtaaacgaattcttatattcaccaatgaagatgatccttttggtactattacaggagcagtgaaaactgatatgattaggacaacacttcaacgtgcaaaggcaattcttctatttaaaactgcatgctgccagcacatctcaaaatgtttttgtcctttttttaccataacaatacttttttttctccagGATGCACAAGATCTTGGCCTGTCTATTGAACTTCTTCCACTGAGCCCGCCTGATGACCAGTTCAACATGTCCCTGTTTTATGCA
upper sequence: GLYMA20G39280.1 (Glycine max), 3'ss of exon 6
lower sequence: GRMZM2G414496_T07 (Zea mays), 3'ss of exon 6
gtaccaatttgtatatgatttagtttatagtatagatggtaaaac-catagagtttgaaggatgctagtagttcataattacttttttttggtttgtgaagGATGCACAGGATCTTGGCATTTCTATTGAACTTCTTCCCTTGAGTCACCCTGATGAGGTGTTCAATGTATCTCAATTCTATGCT
||||| | ||| || | | | | | | | | | || | |||| || | || | || || | ||| ||| | |||||||||| ||||||||| | ||||||||||||||||| |||| | |||||||| |||||| | || | || |||||
---gcaattcttctat--ttaaaactgca-tgctgccagcacatctcaaaatgtttt-----tgtcctttttttaccataacaatacttttttttctccagGATGCACAAGATCTTGGCCTGTCTATTGAACTTCTTCCACTGAGCCCGCCTGATGACCAGTTCAACATGTCCCTGTTTTATGCAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|18040442|gb|BM308736.1|BM308736EST: AAGGGGCAGTAAAATCAGATATGACAAGAATGACACTGCAGAGAGCTAAA GATGCACAGGATCTTGGCATTTCTATTGAACTTCTTCCCTTGAGTCACCCT
genomic: AAGGGGCAGTAAAATCAGATATGACAAGAATGACACTGCAGAGAGCTAAAgtaccaattt ... gtttgtgaagGATGCACAGGATCTTGGCATTTCTATTGAACTTCTTCCCTTGAGTCACCCT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.catagagtttgaaggatgctagtagttcataattacttttttttggtttgtgaagGATGCACAGGATCTTGGCATTTCTATTGAACTTCTTCCCTTGAGTCACCCTGATGAGGTGTTCAATGTATCTCAATTCTATGCT
cttttttttggttt CT-rich tract
tagttcataattactt TA-rich tract