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gtaagtaacattgccatattttccctggattgtaagtgaattgaaaacaagcaacaaaagaacattctaaatccgtattattctaataatatgggttttgtttcagGCTCGTGTGCGGGGTAAGATCGATTCAAACGGTGTTGCATCCGCTCTCCTTGAAGAAAGATTGAGTATGGGACTCAATTTTCTTCTTTCTGCAGAG
species | Arabidopsis thaliana |
transcript | AT3G20000.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTCAAGAGATGTAACAGCTAGTGTGGGTTATGACTATATGCTTAGACAG GCTCGTGTGCGGGGTAAGATCGATTCAAACGGTGTTGCATCCGCTCTCCTTEST: gi|86076058|gb|DR371815.1|DR371815
genomic: TTTCAAGAGATGTAACAGCTAGTGTGGGTTATGACTATATGCTTAGACAGgtaagtaaca ... tttgtttcagGCTCGTGTGCGGGGTAAGATCGATTCAAACGGTGTTGCATCCGCTCTCCTT
EST: TTTCAAGAGATGTAACAGCTAGTGTGGGTTATGACTATATGCTTAGACAG GCTCGTGTGCGGGGTAAGATCGATTCAAACGGTGTTGCATCCGCTCTCCTTEST: gi|124751728|gb|EH841858.1|EH841858
genomic: TTTCAAGAGATGTAACAGCTAGTGTGGGTTATGACTATATGCTTAGACAGgtaagtaaca ... tttgtttcagGCTCGTGTGCGGGGTAAGATCGATTCAAACGGTGTTGCATCCGCTCTCCTT
EST: CTAGTGTGGGTTATGACTATATGCTTAGACAG GCTCGTGTGCGGGGTAAGATCGATTCAAACGGTGTTGCATCCGCTCTCCTTEST: gi|116432713|gb|EG475305.1|EG475305
genomic: CTAGTGTGGGTTATGACTATATGCTTAGACAGgtaagtaaca ... tttgtttcagGCTCGTGTGCGGGGTAAGATCGATTCAAACGGTGTTGCATCCGCTCTCCTT
EST: TTTCAAGAGATGTAACAGCTAGTGTGGGTTATGACTATATGCTTAGACAG GCTCGTGTGCGGGGTAAGATCGATTCAAACGGTGTTGCATCCGCTCTCCTTEST: gi|125222847|gb|EL236932.1|EL236932
genomic: TTTCAAGAGATGTAACAGCTAGTGTGGGTTATGACTATATGCTTAGACAGgtaagtaaca ... tttgtttcagGCTCGTGTGCGGGGTAAGATCGATTCAAACGGTGTTGCATCCGCTCTCCTT
EST: TGACTATATGCTTAGACAG GCTCGTGTGCGGGGTAAGGATCGATTCAAACGGTGTTGCATCCGCTCTCCT
genomic: TGACTATATGCTTAGACAGgtaagtaaca ... tttgtttcagGCTCGTGTGCGGGGTAA-GATCGATTCAAACGGTGTTGCATCCGCTCTCCT
caacaaaagaacattctaaatccgtattattctaataatatgggttttgtttcagGCTCGTGTGCGGGGTAAGATCGATTCAAACGGTGTTGCATCCGCTCTCCTTGAAGAAAGATTGAGTATGGGACTCAATTTTCTTCTTTCTGCAGAG
ttctaat putative branch site (score: 2)
ttttgtttc putative PPT
tattattctaataata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaacattgccatattttccctggattgtaagtgaattgaaaacaagcaacaaaagaacattctaaatccgtattattctaataatatgggttttgtttcagGCTCGTGTGCGGGGTAAGATCGATTCAAACGGTGTTGCATCCGCTCTCCTTGAAGAAAGATTGAGTATGGGACTCAATTTTCTTCTTTCTGCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG