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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTCCAGCTCGTGACTGGGCGTGTCTGGAAGGGAACCGCTTTCGGTGGCTTCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgcgctatcacgagtacttgcccagccaagtgtgttctcggcttaccaaagtttgtgctgtccgcag

Basic information

species Zea mays
transcript GRMZM5G824600_T03
intron # 8
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60343794|gb|DN210767.1|DN210767
EST:     TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAG                         GAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
genomic: TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
EST: gi|161587047|gb|EY954209.1|EY954209
EST:     CGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAGAAG                         GAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
genomic: CGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
EST: gi|74034792|gb|DT535283.1|DT535283
EST:     CAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAAG                         GAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGA
genomic: CAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAA-Ggtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGA
EST: gi|78077865|gb|DV506290.1|DV506290
EST:     TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAG                         GAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
genomic: TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
EST: gi|211384473|gb|FL377381.1|FL377381
EST:     TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAG                         GAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
genomic: TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
EST: gi|61119600|gb|DN560561.1|DN560561
EST:     TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAG                         GAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
genomic: TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
EST: gi|60349074|gb|DN216047.1|DN216047
EST:     TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAG                         GAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
genomic: TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
EST: gi|78120687|gb|DV539071.1|DV539071
EST:     TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAG                         GAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
genomic: TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
EST: gi|211142580|gb|FL467371.1|FL467371
EST:     TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAG                         GAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
genomic: TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
EST: gi|78077864|gb|DV506289.1|DV506289
EST:     TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAG                         GAAATTAAGGTGGAGGAGTACATTTCGCACAACATGAACCTGGCTGACATC
genomic: TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
EST: gi|91873469|gb|EB403426.1|EB403426
EST:     TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAG                         GAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
genomic: TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
EST: gi|71429707|gb|DR810757.1|DR810757
EST:     TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAG                         GAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
genomic: TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
EST: gi|78092172|gb|DV520546.1|DV520546
EST:     TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAG                         GAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
genomic: TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
EST: gi|110940376|gb|EE160533.1|EE160533
EST:     TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAG                         GAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
genomic: TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
EST: gi|60337655|gb|DN204628.1|DN204628
EST:     TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAG                         GAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
genomic: TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
EST: gi|18177003|gb|BM378213.1|BM378213
EST:     TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAG                         GAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
genomic: TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
EST: gi|30087007|gb|CB885215.1|CB885215
EST:     TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAG                         GAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
genomic: TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
EST: gi|6526663|gb|AW215954.1|AW215954
EST:     TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAG                         GAAATTAAGGTGGACGAGTACATTACGCCCAACATGAACCTGGCTGACATC
genomic: TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
EST: gi|91053435|gb|EB163853.1|EB163853
EST:     TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAG                         GAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
genomic: TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
EST: gi|166698096|gb|EG135847.1|EG135847
EST:     TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAGAAG                         GAAATTAAGGTGGACGAGTAC
genomic: TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTAC
EST: gi|60348372|gb|DN215345.1|DN215345
EST:     TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAG                         GAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
genomic: TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
EST: gi|60344516|gb|DN211489.1|DN211489
EST:     TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAG                         GAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
genomic: TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
EST: gi|110515671|gb|EE020259.1|EE020259
EST:     TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAG                         GAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
genomic: TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
EST: gi|110518190|gb|EE022777.1|EE022777
EST:     TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAG                         GAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC
genomic: TCAAGAGCCGGACCCAGGTCCCATGGCTTGTTGACAAGTACATGAAAAAGgtactgctgc ... ctgtccgcagGAAATTAAGGTGGACGAGTACATTACGCACAACATGAACCTGGCTGACATC