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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gttagacacatgctgtgcaattatagtaggtattatttagttgaccatgtggtcatgttagaacactagaacgatattaatacctccgttttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG

Basic information

species Zea mays
transcript GRMZM5G824600_T03
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30031752|gb|CB833603.1|CB833603
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|78120688|gb|DV539072.1|DV539072
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|211039700|gb|FL404729.1|FL404729
EST:     TCCTCTTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|149001497|gb|EE038802.2|EE038802
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTC-TTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|149072277|gb|EE160534.2|EE160534
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|31359124|gb|CD443481.1|CD443481
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|211036986|gb|FL384639.1|FL384639
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|211131034|gb|FL389071.1|FL389071
EST:     TCCTCTTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|149079072|gb|EE167968.2|EE167968
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|211348394|gb|FL389755.1|FL389755
EST:     TCCTCTTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|148930859|gb|EC873272.2|EC873272
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|211515951|gb|FL387225.1|FL387225
EST:     TCCTCTTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|211161645|gb|FL415246.1|FL415246
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|31355865|gb|CD440222.1|CD440222
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|211278999|gb|FL407010.1|FL407010
EST:     TCCTCTTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|211387462|gb|FL395676.1|FL395676
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|211445801|gb|FL398448.1|FL398448
EST:     TCCTCTTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|91873470|gb|EB403427.1|EB403427
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|149107259|gb|EE189142.2|EE189142
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|149103654|gb|EE289058.2|EE289058
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|211334202|gb|FL380510.1|FL380510
EST:     TCCTCTTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|148972824|gb|EE023810.2|EE023810
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|148967436|gb|EE018664.2|EE018664
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|149055770|gb|EE156478.2|EE156478
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|32944033|gb|CF048852.1|CF048852
EST:     TCCTCTTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|211082655|gb|FL412219.1|FL412219
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|211384815|gb|FL395209.1|FL395209
EST:     TCCTCTTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|211379704|gb|FL400540.1|FL400540
EST:     TCCTCTTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|211443087|gb|FL371618.1|FL371618
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|211104613|gb|FL378516.1|FL378516
EST:     TCCTCTTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|31355257|gb|CD439614.1|CD439614
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|211389781|gb|FL378705.1|FL378705
EST:     TCCTCTTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|211161471|gb|FL406110.1|FL406110
EST:     TCCTCTTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|91053436|gb|EB163854.1|EB163854
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|148995675|gb|EE034892.2|EE034892
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|211206484|gb|FL368372.1|FL368372
EST:     TCCTCTTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|31355494|gb|CD439851.1|CD439851
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|78092173|gb|DV520547.1|DV520547
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|211169686|gb|FL404318.1|FL404318
EST:     TCCTCTTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|148971977|gb|EE022778.2|EE022778
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|91876670|gb|EB406627.1|EB406627
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|31355047|gb|CD439404.1|CD439404
EST:     TCCTATTCACTGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|211233989|gb|FL398757.1|FL398757
EST:     TCCTCTTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|84980461|gb|DW530810.1|DW530810
EST:     TCCTCTTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|21389945|gb|BQ527994.1|BQ527994
EST:     TCCTCTTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|211106396|gb|FL373129.1|FL373129
EST:     TCCTCTTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|148951255|gb|EC896953.2|EC896953
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|71429708|gb|DR810758.1|DR810758
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|148969452|gb|EE020260.2|EE020260
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|84980410|gb|DW530759.1|DW530759
EST:     TCCTCTTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|20811111|gb|BQ295589.1|BQ295589
EST:     TCCTCTTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
EST: gi|31355949|gb|CD440306.1|CD440306
EST:     TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAG                         GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
genomic: TCCTATTCACCGCGCTCTGCCACACCGACCACTACACCTGGAGCGGCAAGgtgttgtctt ... ttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgtggtcatgttagaacactagaacgatattaatacctccgttttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG
                             tattaat  putative branch site (score: 2)
                                   tacctccgttttct  CT-rich tract
                            atattaata  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttagacacatgctgtgcaattatagtaggtattatttagttgaccatgtggtcatgttagaacactagaacgatattaatacctccgttttctatgcagGATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC