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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtgtgtgtgtatttgcttcagttctatacacgaagtaattcatcgttgggctgtgatggacaatttttcttttacttgtcttaatag

Basic information

species Zea mays
transcript GRMZM5G824600_T03
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30031752|gb|CB833603.1|CB833603
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|78120688|gb|DV539072.1|DV539072
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|211039700|gb|FL404729.1|FL404729
EST:     GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|149001497|gb|EE038802.2|EE038802
EST:     GATCCTGAGGGTC-TTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|149072277|gb|EE160534.2|EE160534
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|31359124|gb|CD443481.1|CD443481
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|211036986|gb|FL384639.1|FL384639
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|211131034|gb|FL389071.1|FL389071
EST:     GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|149079072|gb|EE167968.2|EE167968
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|211348394|gb|FL389755.1|FL389755
EST:     GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|148930859|gb|EC873272.2|EC873272
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|211515951|gb|FL387225.1|FL387225
EST:     GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|211161645|gb|FL415246.1|FL415246
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCSGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|31355865|gb|CD440222.1|CD440222
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|211278999|gb|FL407010.1|FL407010
EST:     GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|211387462|gb|FL395676.1|FL395676
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|211445801|gb|FL398448.1|FL398448
EST:     GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|91873470|gb|EB403427.1|EB403427
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|149107259|gb|EE189142.2|EE189142
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|149103654|gb|EE289058.2|EE289058
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|211334202|gb|FL380510.1|FL380510
EST:     GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|148972824|gb|EE023810.2|EE023810
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|148967436|gb|EE018664.2|EE018664
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|149055770|gb|EE156478.2|EE156478
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|32944033|gb|CF048852.1|CF048852
EST:     GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|211082655|gb|FL412219.1|FL412219
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|211384815|gb|FL395209.1|FL395209
EST:     GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|211379704|gb|FL400540.1|FL400540
EST:     GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|211443087|gb|FL371618.1|FL371618
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|211104613|gb|FL378516.1|FL378516
EST:     GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|31355257|gb|CD439614.1|CD439614
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|211389781|gb|FL378705.1|FL378705
EST:     GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|211161471|gb|FL406110.1|FL406110
EST:     GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|91053436|gb|EB163854.1|EB163854
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|148995675|gb|EE034892.2|EE034892
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|211206484|gb|FL368372.1|FL368372
EST:     GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|31355494|gb|CD439851.1|CD439851
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|78092173|gb|DV520547.1|DV520547
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|211169686|gb|FL404318.1|FL404318
EST:     GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|148971977|gb|EE022778.2|EE022778
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|91876670|gb|EB406627.1|EB406627
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|31355047|gb|CD439404.1|CD439404
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|211233989|gb|FL398757.1|FL398757
EST:     GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|84980461|gb|DW530810.1|DW530810
EST:     GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|21389945|gb|BQ527994.1|BQ527994
EST:     GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|211106396|gb|FL373129.1|FL373129
EST:     GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|148951255|gb|EC896953.2|EC896953
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|71429708|gb|DR810758.1|DR810758
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|148969452|gb|EE020260.2|EE020260
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|84980410|gb|DW530759.1|DW530759
EST:     GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|20811111|gb|BQ295589.1|BQ295589
EST:     GATCCTGAGGGTCTTTTTCCTTGCATTCTTGGCCACGAAGCTGCTGG                         AATTGTTTTAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
EST: gi|31355949|gb|CD440306.1|CD440306
EST:     GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGG                         AATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA
genomic: GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtg ... gtcttaatagAATTGTGGAAAGTGTCGGTGAAGGAGTAACTGATGTGCAGCCTGGGGATCA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATCCTGAGGGTCTTTTCCCTTGCATTCTTGGCCACGAAGCTGCCGGgtaataagtgtgtgtgtatttgcttcagttctatacacgaagtaattcatcgttgggctgtgatggacaatttttcttttacttgtcttaatag

- - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - AGCTGC