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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTCTCCACTGCTCCGTCCAGCGCGTCCACCTCCCAAACCCCTACTCCCCCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgcttgatcttgtgtgctcctgcttcttcgcatcggtaggggtagcagtttccttgtattgttcgttgttcgtacgacgttcgatttgatctggcgtgagggggttcatggctggtctgtgcgtgcag

Basic information

species Zea mays
transcript GRMZM5G824600_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30031752|gb|CB833603.1|CB833603
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|78120688|gb|DV539072.1|DV539072
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|211039700|gb|FL404729.1|FL404729
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCGCTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|149001497|gb|EE038802.2|EE038802
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|149072277|gb|EE160534.2|EE160534
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|31359124|gb|CD443481.1|CD443481
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|211036986|gb|FL384639.1|FL384639
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|211131034|gb|FL389071.1|FL389071
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|149079072|gb|EE167968.2|EE167968
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|211348394|gb|FL389755.1|FL389755
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCGCTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|148930859|gb|EC873272.2|EC873272
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|211515951|gb|FL387225.1|FL387225
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|211161645|gb|FL415246.1|FL415246
EST:     CAGGAAGCAATGGCTTCCCCCASSSSAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAASAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CAGGAAGCAATGGCTTCCCCCA-CCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|31355865|gb|CD440222.1|CD440222
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|211278999|gb|FL407010.1|FL407010
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|211387462|gb|FL395676.1|FL395676
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|211445801|gb|FL398448.1|FL398448
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGCTGGCGGAGGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|91873470|gb|EB403427.1|EB403427
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|149107259|gb|EE189142.2|EE189142
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|149103654|gb|EE289058.2|EE289058
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|211334202|gb|FL380510.1|FL380510
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCGCTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|148972824|gb|EE023810.2|EE023810
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|148967436|gb|EE018664.2|EE018664
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|149055770|gb|EE156478.2|EE156478
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|211082655|gb|FL412219.1|FL412219
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|211384815|gb|FL395209.1|FL395209
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|211379704|gb|FL400540.1|FL400540
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCGCTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|211443087|gb|FL371618.1|FL371618
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCSAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|211104613|gb|FL378516.1|FL378516
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|31355257|gb|CD439614.1|CD439614
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|211389781|gb|FL378705.1|FL378705
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCGCTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|211161471|gb|FL406110.1|FL406110
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|91053436|gb|EB163854.1|EB163854
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|148995675|gb|EE034892.2|EE034892
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|211206484|gb|FL368372.1|FL368372
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCGCTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|31355494|gb|CD439851.1|CD439851
EST:     CCAGGAACCTATGACTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCATTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|78092173|gb|DV520547.1|DV520547
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|211169686|gb|FL404318.1|FL404318
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|148971977|gb|EE022778.2|EE022778
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|211065481|gb|FL387256.1|FL387256
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|211051333|gb|FL399877.1|FL399877
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGATGCCGAACAAGCYCGCTCGTGATCGAGGACGTGCA
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGA-GCCGAACAAGC-CACTCGTGATCGAGGACGTGCA
EST: gi|91876670|gb|EB406627.1|EB406627
EST:     CCAGGAAGCAATGGATTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|84980461|gb|DW530810.1|DW530810
EST:     CAGGAAGCAATGGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCGCTCGTGATCGAGGACGTGCAGG
genomic: CAGGAAGCAAT-GGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|21389945|gb|BQ527994.1|BQ527994
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|211106396|gb|FL373129.1|FL373129
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|148951255|gb|EC896953.2|EC896953
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|71429708|gb|DR810758.1|DR810758
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|148969452|gb|EE020260.2|EE020260
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|84980410|gb|DW530759.1|DW530759
EST:     CAGGAAGCAATGGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCGCTCGTGATCGAGGACGTGCAGG
genomic: CAGGAAGCAAT-GGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
EST: gi|31355949|gb|CD440306.1|CD440306
EST:     CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAG                         CGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG
genomic: CCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 182

ATCTCTCCACTGCTCCGTCCAGCGCGTCCACCTCCCAAACCCCTACTCCCCCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGGTGGCGCCGCCGCAGGCCGGCGAGGTCCGCGTCAAGATCCTATTCACCGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 169

ATCTCTCCACTGCTCCGTCCAGCGCGTCCACCTCCCAAACCCCTACTCCCCCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGGTGGCGCCGCCGCAGGCCGGCGAGGTCCGCGTCAAGATCCTATTCACCGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 65

ATCTCTCCACTGCTCCGTCCAGCGCGTCCACCTCCCAAACCCCTACTCCCCCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGGTGGCGCCGCCGCAGGCCGGCGAGGTCCGCGTCAAGATCCTATTCACCGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 121

ATCTCTCCACTGCTCCGTCCAGCGCGTCCACCTCCCAAACCCCTACTCCCCCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgct ... gtgcgtgcagCGGCGGTGGCGTACGAGCCGAACAAGCCACTCGTGATCGAGGACGTGCAGGTGGCGCCGCCGCAGGCCGGCGAGGTCCGCGTCAAGATCCTATTCACCGC


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATCTCTCCACTGCTCCGTCCAGCGCGTCCACCTCCCAAACCCCTACTCCCCCAGGAAGCAATGGCTTCCCCCACCCAGGGCCAGGTCATCACCTGCAAAGgtaacctgcttgatcttgtgtgctcctgcttcttcgcatcggtaggggtagcagtttccttgtattgttcgttgttcgtacgacgttcgatttgatctggcgtgagggggttcatggctggtctgtgcgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG