1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GTCTTGGAGCGGTGTGGAATACTGCAAAGGTTGAATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttctcttattaggtcattgtcataaacctgagttagtgggtaggattttgacttctgagtttctcctttag
species | Zea mays |
transcript | GRMZM5G824600_T03 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|149001497|gb|EE038802.2|EE038802
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|31359124|gb|CD443481.1|CD443481
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|211527705|gb|FL414610.1|FL414610
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|148930859|gb|EC873272.2|EC873272
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|60343794|gb|DN210767.1|DN210767
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|31355865|gb|CD440222.1|CD440222
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|74034792|gb|DT535283.1|DT535283
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|78077865|gb|DV506290.1|DV506290
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: CAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|149107259|gb|EE189142.2|EE189142
genomic: CAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|149103654|gb|EE289058.2|EE289058
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|211334202|gb|FL380510.1|FL380510
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTEST: gi|148972824|gb|EE023810.2|EE023810
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCT
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTGGGACTTGCA GGTGCTGAGGGAGCAAA-GCCTGCTGGGGCTTCTCGAGTTATTGGCAEST: gi|148967436|gb|EE018664.2|EE018664
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGC-TGCTGGTGCTTCTCGAGTTATTGGCA
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|149055770|gb|EE156478.2|EE156478
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|211384815|gb|FL395209.1|FL395209
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGAAACAGTTGGACTTTCA TTTGCTGAGGGAGCAAAAGCTEST: gi|211392726|gb|FL395705.1|FL395705
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCT
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GNTGCTGAGGGAGCAAAAGCTGCTGGEST: gi|91053436|gb|EB163854.1|EB163854
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGG
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGGTATTGGCATTGACEST: gi|211288478|gb|FL412711.1|FL412711
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|31355494|gb|CD439851.1|CD439851
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|78092173|gb|DV520547.1|DV520547
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|211271449|gb|FL402756.1|FL402756
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|211087315|gb|FL378413.1|FL378413
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|148971977|gb|EE022778.2|EE022778
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGCGTTATTGGCATTGACEST: gi|78092172|gb|DV520546.1|DV520546
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: TTTTTGGCCTTGGAACAGTGGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|31355047|gb|CD439404.1|CD439404
genomic: TTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|84980461|gb|DW530810.1|DW530810
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCEST: gi|211356389|gb|FL426375.1|FL426375
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|148951255|gb|EC896953.2|EC896953
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|71429708|gb|DR810758.1|DR810758
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGNCAAA-GCTGCTGGTGCTTCTCGAGTTATTGGCATTGAEST: gi|166505655|gb|EG169502.1|EG169502
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAG-CAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGA
EST: GGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCEST: gi|211284800|gb|FL428470.1|FL428470
genomic: GGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGC
EST: TTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|148969452|gb|EE020260.2|EE020260
genomic: TTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTT--GGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|84980410|gb|DW530759.1|DW530759
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCEST: gi|60344516|gb|DN211489.1|DN211489
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTC
EST: CTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|110515671|gb|EE020259.1|EE020259
genomic: CTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTG--TTGGGCCTGGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGACEST: gi|31355949|gb|CD440306.1|CD440306
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
EST: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCA GTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
genomic: AATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttct ... tctcctttagGTTGCTGAGGGAGCAAAAGCTGCTGGTGCTTCTCGAGTTATTGGCATTGAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCTTGGAGCGGTGTGGAATACTGCAAAGGTTGAATCTGGCTCAGTTGTTGCTGTTTTTGGCCTTGGAACAGTTGGACTTGCAgtaagtttctcttattaggtcattgtcataaacctgagttagtgggtaggattttgacttctgagtttctcctttag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT