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gtatgtctagtctacctgaaactagtgatagtagcatatccaggaagaaggaaaacatgatactatgttaacttcgtttgcttttggtccccatgttagtaggcaacaatatgaatatagtatttttcttgttatgatatccaaaatttaaactgctctttgtcaatttgtgaagGTTCAAGACCCTGATAATTCATCTCAGACTGTGTATGATTCATGGATTAAATCGAGCACTCCTCTCCGG
species | Zea mays |
transcript | GRMZM5G815165_T03 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTCTACAACTCCCCAACTTGATGAGTTACTTCAGCAAGTAACTAAAGTG GTTCAAGACCCTGATAATTCATCTCAGACTGCGTATGATTCATGGATTAAAEST: gi|6827070|gb|AW330713.1|AW330713
genomic: CTTCTACAACTCCCCAACTTGATGAGTTACTTCAGCAAGTAACTAAAGTGgtatgtctag ... atttgtgaagGTTCAAGACCCTGATAATTCATCTCAGACTGTGTATGATTCATGGATTAAA
EST: CTTCTACAACTCCCCAACTTGATGAGTTACTTCAGCAAGTAACTAAAGTG GTTCAAGACCCTGATAATTCATCTCAGACTGTGTATGATTCATGGATTAAAEST: gi|78180604|gb|DV550932.1|DV550932
genomic: CTTCTACAACTCCCCAACTTGATGAGTTACTTCAGCAAGTAACTAAAGTGgtatgtctag ... atttgtgaagGTTCAAGACCCTGATAATTCATCTCAGACTGTGTATGATTCATGGATTAAA
EST: CTTCTACAACTCCCCAACTTGATGAGTTACTTCAGCAAGTAACTAAAGTG GTTCAAGACCCTGATAATTCATCTCAGACTGTGTATGATTCATGGATTAAAEST: gi|149019466|gb|EE154376.2|EE154376
genomic: CTTCTACAACTCCCCAACTTGATGAGTTACTTCAGCAAGTAACTAAAGTGgtatgtctag ... atttgtgaagGTTCAAGACCCTGATAATTCATCTCAGACTGTGTATGATTCATGGATTAAA
EST: CTTCTACAACTCCCCAACTTGATGAGTTACTTCAGCAAGTAACTAAAGTG GTTCAAGACCCTGATAATTCATCTCAGACTGTGTATGATTCATGGATTAAA
genomic: CTTCTACAACTCCCCAACTTGATGAGTTACTTCAGCAAGTAACTAAAGTGgtatgtctag ... atttgtgaagGTTCAAGACCCTGATAATTCATCTCAGACTGTGTATGATTCATGGATTAAA
tatttttcttgttatgatatccaaaatttaaactgctctttgtcaatttgtgaagGTTCAAGACCCTGATAATTCATCTCAGACTGTGTATGATTCATGGATTAAATCGAGCACTCCTCTCCGG
ttatgatatccaaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtctagtctacctgaaactagtgatagtagcatatccaggaagaaggaaaacatgatactatgttaacttcgtttgcttttggtccccatgttagtaggcaacaatatgaatatagtatttttcttgttatgatatccaaaatttaaactgctctttgtcaatttgtgaagGTTCAAGACCCTGATAATTCATCTCAGACTGTGTATGATTCATGGATTAAATCGAGCACTCCTCTCCGG
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