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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATGGGCGGGGCCGTGGCGCCGGAGGACTGGCAGGGCCGTGAAGACGGACCCGTTTACCGCCTCGGGCCAGGGCCGGCAGTTTTGAACCTGACATATCTTgtatgtacaattcgattcgaggcaccttcttttcggctcgttgccttgaagccggcctgacgctgttgttttggattttgcag

Basic information

species Zea mays
transcript GRMZM5G815165_T03
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12046047|gb|BF728186.1|BF728186
EST:     CCG-TTACCGCCTCGGGCCAGGGCCGGCAG-TTTGAACCTGACATATCTT                         GGGAATGATTCGATGGCAACGATTGAGAATGNNNNNNNNATTATCGAGGGC
genomic: CCGTTTACCGCCTCGGGCCAGGGCCGGCAGTTTTGAACCTGACATATCTTgtatgtacaa ... gattttgcagGGGAATGATTCGATGGCAACGATTGAGAATGTCTTCGCCATTATCGAGGGC
EST: gi|6827070|gb|AW330713.1|AW330713
EST:     CCGTTTACCGCCTCGGGCCAGGGCCGGCAGTTTTGAACCTGACATATCTT                         GGGAATGATTCGATGGCAACGATTGAGAATGTCTTCGCCATTATCGAGGGC
genomic: CCGTTTACCGCCTCGGGCCAGGGCCGGCAGTTTTGAACCTGACATATCTTgtatgtacaa ... gattttgcagGGGAATGATTCGATGGCAACGATTGAGAATGTCTTCGCCATTATCGAGGGC
EST: gi|7844379|gb|AW787601.1|AW787601
EST:     CCGTTTACCGCCTCGGGCCAGGGCCGGCAGTTTTGAACCTGACATATCTT                         GGGAATGATTCGATGG
genomic: CCGTTTACCGCCTCGGGCCAGGGCCGGCAGTTTTGAACCTGACATATCTTgtatgtacaa ... gattttgcagGGGAATGATTCGATGG
EST: gi|78180604|gb|DV550932.1|DV550932
EST:     CCGTTTACCGCCTCGGGCCAGGGCCGGCAGTTTTGAACCTGACATATCTT                         GGGAATGATTCGATGGCAACGATTGAGAATGTCTTCGCCATTATCGAGGGC
genomic: CCGTTTACCGCCTCGGGCCAGGGCCGGCAGTTTTGAACCTGACATATCTTgtatgtacaa ... gattttgcagGGGAATGATTCGATGGCAACGATTGAGAATGTCTTCGCCATTATCGAGGGC
EST: gi|149019466|gb|EE154376.2|EE154376
EST:     CCGTTTACCGCCTCGGGCCAGGGCCGGCAGTTTTGAACCTGACATATCTT                         GGGAATGATTCGATGGCAACGATTGAGAATGTCTTCGCCATTATCGAGGGC
genomic: CCGTTTACCGCCTCGGGCCAGGGCCGGCAGTTTTGAACCTGACATATCTTgtatgtacaa ... gattttgcagGGGAATGATTCGATGGCAACGATTGAGAATGTCTTCGCCATTATCGAGGGC