1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
AGAGAATGAAGTGAAGGGAACAACTGTCACTTGTTCCCCTCTGTACAACTCAATCAGAACTCTCGGAGCGGCAGCTACCAAAGTGAATAACGAACAAAAGgtgacttcacttgagaattgctgctcgagttatgcagaacttacagtctaccatactgcattttgttcactgtgatgatgacaagaaacatgggcactttcag
species | Zea mays |
transcript | GRMZM5G815165_T03 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CAATCAGAACTCTCGGAGCGGCAGCTACCAAAGTGAATAACGAACAAAAG GAACTTCAAAAGCTACTCTTGAGCAAGCAGCTGAACAAGGATTCACTGAAAEST: gi|76290785|gb|DV030353.1|DV030353
genomic: CAATCAGAACTCTCGGAGCGGCAGCTACCAAAGTGAATAACGAACAAAAGgtgacttcac ... gcactttcagGAACTTCAAAAGCTACTCTTGAGCAAGCAGCTGAACAAGGATTCACTGAAA
EST: CAATCAGAACTCTCGGAGCGGCAGCTACCAAAGTGAATAACGAACAAAAG GAACTTCAAAAGCTACTTTTGAGCAAGCAGCTGAACAAGGATTCACTGAAAEST: gi|89754473|gb|DY685244.1|DY685244
genomic: CAATCAGAACTCTCGGAGCGGCAGCTACCAAAGTGAATAACGAACAAAAGgtgacttcac ... gcactttcagGAACTTCAAAAGCTACTCTTGAGCAAGCAGCTGAACAAGGATTCACTGAAA
EST: CAATCAGAACTCTCGGAGCGGCAGCTACCAAAGTGAATAACGAACAAAAG GAACTTCAAAAGCTACTCTTGAGCAAGCAGCTGAACAAGGATTCACTGAAAEST: gi|32847433|gb|CD987114.1|CD987114
genomic: CAATCAGAACTCTCGGAGCGGCAGCTACCAAAGTGAATAACGAACAAAAGgtgacttcac ... gcactttcagGAACTTCAAAAGCTACTCTTGAGCAAGCAGCTGAACAAGGATTCACTGAAA
EST: CAATCAGAACTCTCGGAGCGGCAGCTACCAAAGTGAATAACGAACAAAAG GAACTTCAAAAGCTGCTCTTGAGCAAGCAGCTGAACAAGGATTCACTGAAA
genomic: CAATCAGAACTCTCGGAGCGGCAGCTACCAAAGTGAATAACGAACAAAAGgtgacttcac ... gcactttcagGAACTTCAAAAGCTACTCTTGAGCAAGCAGCTGAACAAGGATTCACTGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGAATGAAGTGAAGGGAACAACTGTCACTTGTTCCCCTCTGTACAACTCAATCAGAACTCTCGGAGCGGCAGCTACCAAAGTGAATAACGAACAAAAGgtgacttcacttgagaattgctgctcgagttatgcagaacttacagtctaccatactgcattttgttcactgtgatgatgacaagaaacatgggcactttcag
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