1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtgagcagatactcatgcgcaaagcattcaccttcctctctcgaaaattgcataaggcttactgttcccatccacagGTGTATGGACCTTCAGACCAGAATGACTGGGATACTGCAGTCTATCCAGGTATAGCCAATGCCATAGCCAGCGCCCGGAGCAGCAACACTTCGGAGTCCT
species | Zea mays |
transcript | GRMZM5G815165_T03 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: CATTCACTAGCAGGGAAGGCATCTTCAAGCTAGAATGGTTTAAGCATCTG GTGTATGGACCTTCAGACCAGAATGACTGGGATACTGCAGTCTATCCAGGTEST: gi|76290785|gb|DV030353.1|DV030353
genomic: CATTCACTAGCAGGGAAGGCATCTTCAAGCTAGAATGGTTTAAGCATCTGgtgagcagat ... ccatccacagGTGTATGGACCTTCAGACCAGAATGACTGGGATACTGCAGTCTATCCAGGT
EST: CATTCACTAGCAGGGAAGGCATTTTCAAGCTAGAATGGTTTAAGCATTTG GTGTATGGACCTTCAGACCAGAATGACTGGGATACTGCAGTCTATCCAGGTEST: gi|89754473|gb|DY685244.1|DY685244
genomic: CATTCACTAGCAGGGAAGGCATCTTCAAGCTAGAATGGTTTAAGCATCTGgtgagcagat ... ccatccacagGTGTATGGACCTTCAGACCAGAATGACTGGGATACTGCAGTCTATCCAGGT
EST: CATTCACTAGCAGGGAAGGCATCTTCAAGCTAGAATGGTTTAAGCATCTG GTGTATGGACCTTCAGACCAGAATGACTGGGATACTGCAGTCTATCCAGGTEST: gi|32847433|gb|CD987114.1|CD987114
genomic: CATTCACTAGCAGGGAAGGCATCTTCAAGCTAGAATGGTTTAAGCATCTGgtgagcagat ... ccatccacagGTGTATGGACCTTCAGACCAGAATGACTGGGATACTGCAGTCTATCCAGGT
EST: CATTCACTAGCAGGGAAGGCATCTTCAAGCTAGAATGGTTTAAGCATCTG GTGTATGGACCTTCAGACCAGAATGGACTGGGATACTGCAGTCTATCCAGG
genomic: CATTCACTAGCAGGGAAGGCATCTTCAAGCTAGAATGGTTTAAGCATCTGgtgagcagat ... ccatccacagGTGTATGGACCTTCAGACCAGAATG-ACTGGGATACTGCAGTCTATCCAGG
agcattcaccttcctctctcgaaaattgcataaggcttactgttcccatccacagGTGTATGGACCTTCAGACCAGAATGACTGGGATACTGCAGTCTATCCAGGTATAGCCAATGCCATAGCCAGCGCCCGGAGCAGCAACACTTCGGAGTCCT
ggcttac putative branch site (score: 3)
ttcccatcc putative PPT
aaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcagatactcatgcgcaaagcattcaccttcctctctcgaaaattgcataaggcttactgttcccatccacagGTGTATGGACCTTCAGACCAGAATGACTGGGATACTGCAGTCTATCCAGGTATAGCCAATGCCATAGCCAGCGCCCGGAGCAGCAACACTTCGGAGTCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG