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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacttcacttgagaattgctgctcgagttatgcagaacttacagtctaccatactgcattttgttcactgtgatgatgacaagaaacatgggcactttcagGAACTTCAAAAGCTACTCTTGAGCAAGCAGCTGAACAAGGATTCACTGAAAATCCGACAACTCAATGACCGTCTTATGCAGACCGAGCGTGCATTCACTA

Basic information

species Zea mays
transcript GRMZM5G815165_T03
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G815165_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g53800.1 (Oryza sativa), 3'ss of exon 10
gtgacttcacttgagaattgctgctcgagt-tatgcagaacttacagtctaccatactgcatttt-gttca--ctgtgatgatgac-aagaaacatgggcactttcagGAACTTCAAAAGCTACTCTTGAGCAAGCAGCTGAACAAGGATTCACTGAAAATCCGACAACTCAATGACCGTCTTATGCAGACCGAGCGTGCATTCACTA
                      |     ||  ||| |||| ||  | | |  || || || || | | |||   | | || ||||| ||||   |||     | | |||| ||||||| || ||| | |||||| |||||||| ||||||||| ||||||| ||    ||||||||||| || |||||| | || || ||||||||||
----------------------gtaaatgtacatgaagaatttctactatttcagacagccttctaggtcaggttttcatcatgactaagaggaatgactgttcttagGAGCTTCAAAGGCAACTGTCGAGCAACCAGCTGAAAAAGGATTCAATGAAAATACGGTCGCTCAATGACCGGCTCATGCAGGCAGAACGGGCATTCACTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18170068|gb|BM339908.1|BM339908
EST:     CAATCAGAACTCTCGGAGCGGCAGCTACCAAAGTGAATAACGAACAAAAG                         GAACTTCAAAAGCTACTCTTGAGCAAGCAGCTGAACAAGGATTCACTGAAA
genomic: CAATCAGAACTCTCGGAGCGGCAGCTACCAAAGTGAATAACGAACAAAAGgtgacttcac ... gcactttcagGAACTTCAAAAGCTACTCTTGAGCAAGCAGCTGAACAAGGATTCACTGAAA
EST: gi|76290785|gb|DV030353.1|DV030353
EST:     CAATCAGAACTCTCGGAGCGGCAGCTACCAAAGTGAATAACGAACAAAAG                         GAACTTCAAAAGCTACTTTTGAGCAAGCAGCTGAACAAGGATTCACTGAAA
genomic: CAATCAGAACTCTCGGAGCGGCAGCTACCAAAGTGAATAACGAACAAAAGgtgacttcac ... gcactttcagGAACTTCAAAAGCTACTCTTGAGCAAGCAGCTGAACAAGGATTCACTGAAA
EST: gi|89754473|gb|DY685244.1|DY685244
EST:     CAATCAGAACTCTCGGAGCGGCAGCTACCAAAGTGAATAACGAACAAAAG                         GAACTTCAAAAGCTACTCTTGAGCAAGCAGCTGAACAAGGATTCACTGAAA
genomic: CAATCAGAACTCTCGGAGCGGCAGCTACCAAAGTGAATAACGAACAAAAGgtgacttcac ... gcactttcagGAACTTCAAAAGCTACTCTTGAGCAAGCAGCTGAACAAGGATTCACTGAAA
EST: gi|32847433|gb|CD987114.1|CD987114
EST:     CAATCAGAACTCTCGGAGCGGCAGCTACCAAAGTGAATAACGAACAAAAG                         GAACTTCAAAAGCTGCTCTTGAGCAAGCAGCTGAACAAGGATTCACTGAAA
genomic: CAATCAGAACTCTCGGAGCGGCAGCTACCAAAGTGAATAACGAACAAAAGgtgacttcac ... gcactttcagGAACTTCAAAAGCTACTCTTGAGCAAGCAGCTGAACAAGGATTCACTGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taccatactgcattttgttcactgtgatgatgacaagaaacatgggcactttcagGAACTTCAAAAGCTACTCTTGAGCAAGCAGCTGAACAAGGATTCACTGAAAATCCGACAACTCAATGACCGTCTTATGCAGACCGAGCGTGCATTCACTA
                                              cactttc  CT-rich tract
           attttgtt  TA-rich tract