1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATATGTCATTCTTGGTAACCATCGTGATGCTTGGACGTTCGGTGCATCTGATCCCAACAGTGGAACAGCAGCTATGATTGAGgtagttgtcagttacaaaaatgtcttctctatggtacgctttgtatttgtggacctactatgccataatactgagtagtttagagcaggtacaaaccatg...
species | Zea mays |
transcript | GRMZM5G815165_T03 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: GGACGTTCGGTGCATCTGATCCCAACAGTGGAACAGCAGCTATGATTGAG TTAGCTAAAAGGTTTTCAATGCTGCAAAAACAAGGATGGAGGCCTCGAAGAEST: gi|6827070|gb|AW330713.1|AW330713
genomic: GGACGTTCGGTGCATCTGATCCCAACAGTGGAACAGCAGCTATGATTGAGgtagttgtca ... atccatctagTTAGCTAAAAGGTTTTCAATGCTGCAAAAACAAGGATGGAGGCCTCGAAGA
EST: GGACGTTCGGTGCATCTGATCCCAACAGTGGAACAGCAGCTATGATTGAG TTAGCTAAAAGGTTTTCAATGCTGCAAAAACAAGGATGGAGGCCTCGAAGAEST: gi|78180604|gb|DV550932.1|DV550932
genomic: GGACGTTCGGTGCATCTGATCCCAACAGTGGAACAGCAGCTATGATTGAGgtagttgtca ... atccatctagTTAGCTAAAAGGTTTTCAATGCTGCAAAAACAAGGATGGAGGCCTCGAAGA
EST: GGACGTTCGGTGCATCTGATCCCAACAGTGGAACAGCAGCTATGATTGAG TTAGCTAAAAGGTTTTCAATGCTGCAAAAACAAGGATGGAGGCCTCGAAGAEST: gi|149019466|gb|EE154376.2|EE154376
genomic: GGACGTTCGGTGCATCTGATCCCAACAGTGGAACAGCAGCTATGATTGAGgtagttgtca ... atccatctagTTAGCTAAAAGGTTTTCAATGCTGCAAAAACAAGGATGGAGGCCTCGAAGA
EST: GGACGTTCGGTGCATCTGATCCCAACAGTGGAACAGCAGCTATGATTGAG TTAGCTAAAAGGTTTTCAATGCTGCAAAAACAAGGATGGAGGCCTCGAAGA
genomic: GGACGTTCGGTGCATCTGATCCCAACAGTGGAACAGCAGCTATGATTGAGgtagttgtca ... atccatctagTTAGCTAAAAGGTTTTCAATGCTGCAAAAACAAGGATGGAGGCCTCGAAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATGTCATTCTTGGTAACCATCGTGATGCTTGGACGTTCGGTGCATCTGATCCCAACAGTGGAACAGCAGCTATGATTGAGgtagttgtcagttacaaaaatgtcttctctatggtacgctttgtatttgtggacctactatgccataatactgagtagtttagagcaggtacaaaccatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT