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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTTTTGATGATGAGATGAGAGCTATTGTTGCAAGCAACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAGgtgatttttactgaagtacaacagtgcattttgatttctaaacataagttctaagttgggtcagtttcattttattttaaccag

Basic information

species Zea mays
transcript GRMZM5G806449_T01
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G806449_T01 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os02g56850.4 (Oryza sativa), 5'ss of exon 6
AGGTTTTGATGATGAGATGAGAGCTATTGTTGCAAGCAACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAGgtgatttttactgaagtacaacagtgcattttgatttctaaacataa-gttctaag-------ttgggtcagtttcatttt-attttaaccag
|||||| ||||||||||||||  |  |||||||||| ||||||||||||||||||||||  || ||||||||||||||||| |||||||||| ||   ||||  | | | |||||||||||||| | |    |   ||| | |        || | || ||||| |||| || | ||||||
AGGTTTCGATGATGAGATGAGGACGGTTGTTGCAAGTAACCTTGAGGGAAGGGGAATCAGATTACATCCAGGGACAAATCTATCTGAGgtgagttaagctgacatcctaaagtgcattttgattcccatgtgttctgttttcacgataggttttgatctgtttcttttttatgtaaaccag

upper sequence: GRMZM5G806449_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA02G08180.1 (Glycine max), 5'ss of exon 8
AGGTTTTGATGATGAGATGAGAGCTATTGTTGCAAGCAACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAGgtgatttttactgaagtacaacagtgc-attttgatttctaaacataagttctaagttgggtcagtttcattttattttaaccag--------------------
||||||||||||||| ||||||||| | |||||||| || ||||| || |||||||| || ||||||||| |||| |||||  |  ||||  ||  |   ||  |       ||| | |   |||| || |  |   || | | |||  | ||||  |   |    ||||                       
AGGTTTTGATGATGAAATGAGAGCTGTAGTTGCAAGAAATCTTGAAGGCAGGGGAATTAATTTGCATCCAAGGACCAATCTGACACAGgtatttcctttggatttgggggtttgctactcacatttgtagaacttctttttcatttgctttagttggaggcttagctaacggtaacaaatttcatttttctag

upper sequence: GRMZM5G806449_T01 (Zea mays), 5'ss of exon 8
lower sequence: GLYMA16G27210.1 (Glycine max), 5'ss of exon 9
AGGTTTTGATGATGAGATGAGAGCTATTGTTGCAAGCAACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAGgtgatttttactgaagtacaacagtgcattttgatttctaaacataagttctaagttgggtcagtt------tcattttattttaaccag--------------
||||||||||||||| |||||||||   || ||||| || ||||| || |||||||| || ||||||||| |||| ||| |  |  ||||  ||  |   |   ||      ||||   | |  | |  | | |  || | | |||  |  |||      | |  | ||  |||| |               
AGGTTTTGATGATGAAATGAGAGCTGCAGTGGCAAGAAATCTTGAAGGCAGGGGAATTAATTTGCATCCAAGGACCAATTTGACACAGgtatttcctttgggtttaggggtttgcaacctcacatttgtaga-actttttcatttgctttggttggaggcttagctaatggtaacaaatttcattattttag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161407234|gb|DW042290.1|DW042290
EST:     ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG                         TTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
genomic: ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAGgtgattttta ... ttttaaccagTTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
EST: gi|211287654|gb|FL367858.1|FL367858
EST:     ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG                         TTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
genomic: ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAGgtgattttta ... ttttaaccagTTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
EST: gi|62550294|gb|DN830714.1|DN830714
EST:     CCAGGGACAAATCTCTCTGAG                         TTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
genomic: CCAGGGACAAATCTCTCTGAGgtgattttta ... ttttaaccagTTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
EST: gi|8368856|gb|BE051801.1|BE051801
EST:     GGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG                         TTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
genomic: GGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAGgtgattttta ... ttttaaccagTTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
EST: gi|211462691|gb|FL336836.1|FL336836
EST:     ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG                         TTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
genomic: ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAGgtgattttta ... ttttaaccagTTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
EST: gi|211123447|gb|FL321141.1|FL321141
EST:     ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG                         TTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
genomic: ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAGgtgattttta ... ttttaaccagTTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
EST: gi|67026810|gb|CO455559.1|CO455559
EST:     ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG                         TTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
genomic: ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAGgtgattttta ... ttttaaccagTTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
EST: gi|24934176|gb|CA452394.1|CA452394
EST:     ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG                         TTGAGTAAAACGGCTGACGGATTAAAAGTTGTAACTGATAAAGGAGAAGAG
genomic: ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAGgtgattttta ... ttttaaccagTTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
EST: gi|211135367|gb|FL349825.1|FL349825
EST:     ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG                         TTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAN
genomic: ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAGgtgattttta ... ttttaaccagTTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
EST: gi|32919439|gb|CF024251.1|CF024251
EST:     ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG                         TTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
genomic: ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAGgtgattttta ... ttttaaccagTTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
EST: gi|32794339|gb|CD946575.1|CD946575
EST:     ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG                         TTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
genomic: ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAGgtgattttta ... ttttaaccagTTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
EST: gi|24934507|gb|CA452725.1|CA452725
EST:     ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG                         TTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
genomic: ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAGgtgattttta ... ttttaaccagTTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
EST: gi|211396212|gb|FL320934.1|FL320934
EST:     ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG                         TTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
genomic: ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAGgtgattttta ... ttttaaccagTTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
EST: gi|47961736|gb|CN844445.1|CN844445
EST:     ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG                         TTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
genomic: ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAGgtgattttta ... ttttaaccagTTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
EST: gi|211460047|gb|FL333663.1|FL333663
EST:     ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG                         TTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
genomic: ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAGgtgattttta ... ttttaaccagTTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
EST: gi|51593048|gb|CV072194.1|CV072194
EST:     ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG                         TTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
genomic: ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAGgtgattttta ... ttttaaccagTTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
EST: gi|33942527|gb|CF349127.1|CF349127
EST:     ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG                         TTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
genomic: ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAGgtgattttta ... ttttaaccagTTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
EST: gi|211540781|gb|FL336428.1|FL336428
EST:     ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG                         TTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
genomic: ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAGgtgattttta ... ttttaaccagTTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
EST: gi|108823920|gb|EC277928.1|EC277928
EST:     GGGACAAATCTCTCTGAG                         TTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
genomic: GGGACAAATCTCTCTGAGgtgattttta ... ttttaaccagTTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
EST: gi|211318389|gb|FL341246.1|FL341246
EST:     ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG                         TTGAGTAAAACGGCTGACGGAATAAAAGTTGYAACTGATAAAGGAGAAGAG
genomic: ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAGgtgattttta ... ttttaaccagTTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
EST: gi|24934516|gb|CA452734.1|CA452734
EST:     ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAG                         TTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG
genomic: ACCTTGAGGGAAGGGGAATCAAGTTGCATCCAGGGACAAATCTCTCTGAGgtgattttta ... ttttaaccagTTGAGTAAAACGGCTGACGGAATAAAAGTTGTAACTGATAAAGGAGAAGAG