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gttagtcatgttactgtcttattatgatagaactaatgtgggtatccaaaatggttctgaagtggctatcatggaatctaaggacacacttgccttgattgtagattgtatgtgaactgtagttttgttacaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGAAAACGCTATTGGAAAATAAG
species | Zea mays |
transcript | GRMZM5G806449_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCTGTGGAGAATTTGAG GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGEST: gi|149077608|gb|EE166308.2|EE166308
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGEST: gi|29577206|gb|CB617318.1|CB617318
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGEST: gi|31611942|gb|CD568564.1|CD568564
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGEST: gi|31664370|gb|CD573095.1|CD573095
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGEST: gi|211426647|gb|FL071975.1|FL071975
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG GATTCGAAGAATTTTGGGTGGGAGATTEST: gi|211426649|gb|FL071977.1|FL071977
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATT
EST: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGGGAATTTGAG GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGEST: gi|24934176|gb|CA452394.1|CA452394
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: ACCTAAAAAGAT-CTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGEST: gi|31405875|gb|CD484607.1|CD484607
genomic: ACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGEST: gi|30306583|gb|CD001256.1|CD001256
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGEST: gi|24934507|gb|CA452725.1|CA452725
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: CTCGTGTATGGTGCATCATTCCGTGGAGAATNTGAG GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGEST: gi|211426648|gb|FL071976.1|FL071976
genomic: CTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: ATCATTCCGTGGAGAATTTGAG GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGEST: gi|211337400|gb|FK980798.1|FK980798
genomic: ATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCTGTGGAGAATTTGAG GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGEST: gi|28910264|gb|CB331352.1|CB331352
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGEST: gi|211341005|gb|FL266234.1|FL266234
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG GATTCGAT-AATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGEST: gi|32938226|gb|CF043045.1|CF043045
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: ACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGGTATTATTTTCAATTGGEST: gi|31611973|gb|CD568595.1|CD568595
genomic: ACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGEST: gi|211337405|gb|FK980803.1|FK980803
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCTGTGGAGAATTTGAG GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGEST: gi|76012767|gb|DT939937.1|DT939937
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGEST: gi|148994377|gb|EE034060.2|EE034060
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGEST: gi|24934516|gb|CA452734.1|CA452734
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: ACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGEST: gi|149108741|gb|EE292941.2|EE292941
genomic: ACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
EST: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAG GATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
genomic: TACCTAAAAAGATACTCGTGTATGGTGCATCATTCCGTGGAGAATTTGAGgttagtcatg ... acaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGG
cacacttgccttgattgtagattgtatgtgaactgtagttttgttacaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGAAAACGCTATTGGAAAATAAG
ccttgat putative branch site (score: 5)
ttttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagtcatgttactgtcttattatgatagaactaatgtgggtatccaaaatggttctgaagtggctatcatggaatctaaggacacacttgccttgattgtagattgtatgtgaactgtagttttgttacaaatgcagGATTCGAAGAATTTTGGGTGGGAGATTAACGGAGATATTAACTTCAATTGGAAAACGCTATTGGAAAATAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT