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...gccctgcaacgcaataacaatcgtatcatgtgtttggtgtcctacaatggtcgggtctgttgcttcttgtctttttgactccttgtgggatttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC
species | Zea mays |
transcript | GRMZM5G806449_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|149077608|gb|EE166308.2|EE166308
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|29577206|gb|CB617318.1|CB617318
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|31611942|gb|CD568564.1|CD568564
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|31664370|gb|CD573095.1|CD573095
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|211426647|gb|FL071975.1|FL071975
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|211426649|gb|FL071977.1|FL071977
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGATCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|31405875|gb|CD484607.1|CD484607
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GCTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|30306583|gb|CD001256.1|CD001256
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|211337400|gb|FK980798.1|FK980798
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|28910264|gb|CB331352.1|CB331352
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GCTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|211341005|gb|FL266234.1|FL266234
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGTGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|31611973|gb|CD568595.1|CD568595
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCT-AG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|211337405|gb|FK980803.1|FK980803
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|76012767|gb|DT939937.1|DT939937
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|148994377|gb|EE034060.2|EE034060
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAEST: gi|149108741|gb|EE292941.2|EE292941
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
EST: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAG GTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
genomic: GCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgct ... tttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGA
aatggtcgggtctgttgcttcttgtctttttgactccttgtgggatttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC
ttttgac putative branch site (score: 3)
tttct putative PPT
tcttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gccctgcaacgcaataacaatcgtatcatgtgtttggtgtcctacaatggtcgggtctgttgcttcttgtctttttgactccttgtgggatttctggcagGTTGCGATTTGTGAGCTCCCATTCCACCCCATCAGCTCAGAGTGGCTAGGAGGACATGGTGGGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG