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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGAAGTTAGCCAGCCTGATGGTTCAAAGCAAAGGTATACAGCGAAGCACATTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAGgtttgtaaaattccccacctaccttgtcactaaaacttgcacagtttgattccattaatacttgtttattttctagctgattgatgctgaagatgggtga...

Basic information

species Zea mays
transcript GRMZM5G806449_T01
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G806449_T01 (Zea mays), 5'ss of exon 5
lower sequence: LOC_Os02g56850.4 (Oryza sativa), 5'ss of exon 3
TGAAGTTAGCCAGCCTGATGGTTCAAAGCAAAGGTATACAGCGAAGCACATTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAGgtttgtaaaattccccacctacctt---------gtcactaaaacttgcacagt--ttgattccattaatacttgtttattttctagctgattgatgctgaagatgggtga
|||||| |   |||| ||||||||||||||||| |||||||| |||||||| ||||| || ||||||||||| ||||||||||||||||| ||||| |||||    ||||||| |  ||  ||||         ||  || |    ||   |||  || ||  ||||  |||||||||     ||   | ||     |  |          
TGAAGTCACAAAGCCAGATGGTTCAAAGCAAAGATATACAGCAAAGCACATATTGATAGCAACTGGTAGCCGAGCTCAACGTGTCAACATTCCTGGGAAGgta-acaaaattctctgccagcctttgcaaacttgtttcttatgtctggcaagtagttaatagcattgttacttgtttgacaacttctttatattccccaa----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149077608|gb|EE166308.2|EE166308
EST:     TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAG                         GATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
genomic: TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAGgtttgtaaaa ... cttttttcagGATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
EST: gi|31611942|gb|CD568564.1|CD568564
EST:     TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAG                         GATCTGGCTATTACTTCTGATGAGGGCTTGAGCTTGGAGGAGCTTCCAAAG
genomic: TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAGgtttgtaaaa ... cttttttcagGATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
EST: gi|31664370|gb|CD573095.1|CD573095
EST:     TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAG                         GATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
genomic: TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAGgtttgtaaaa ... cttttttcagGATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
EST: gi|67026810|gb|CO455559.1|CO455559
EST:     TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAG                         GATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
genomic: TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAGgtttgtaaaa ... cttttttcagGATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
EST: gi|24934176|gb|CA452394.1|CA452394
EST:     TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAG                         GATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
genomic: TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAGgtttgtaaaa ... cttttttcagGATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
EST: gi|24934507|gb|CA452725.1|CA452725
EST:     TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAG                         GATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
genomic: TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAGgtttgtaaaa ... cttttttcagGATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
EST: gi|211426648|gb|FL071976.1|FL071976
EST:     TTTTGATCGCGACTGGTAGCCGBGCTCAACGTGTCMACATACCTGGAAAG                         GATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
genomic: TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAGgtttgtaaaa ... cttttttcagGATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
EST: gi|33942527|gb|CF349127.1|CF349127
EST:     TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAG                         GATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
genomic: TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAGgtttgtaaaa ... cttttttcagGATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
EST: gi|32938226|gb|CF043045.1|CF043045
EST:     TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAG                         GATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
genomic: TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAGgtttgtaaaa ... cttttttcagGATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
EST: gi|31611973|gb|CD568595.1|CD568595
EST:     TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAG                         GATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
genomic: TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAGgtttgtaaaa ... cttttttcagGATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
EST: gi|76012767|gb|DT939937.1|DT939937
EST:     TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAG                         GATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
genomic: TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAGgtttgtaaaa ... cttttttcagGATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
EST: gi|148994377|gb|EE034060.2|EE034060
EST:     TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAG                         GATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
genomic: TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAGgtttgtaaaa ... cttttttcagGATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
EST: gi|24934516|gb|CA452734.1|CA452734
EST:     TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAG                         GATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
genomic: TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAGgtttgtaaaa ... cttttttcagGATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
EST: gi|149108741|gb|EE292941.2|EE292941
EST:     TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAG                         GATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG
genomic: TTTTGATCGCGACTGGTAGCCGTGCTCAACGTGTCAACATACCTGGAAAGgtttgtaaaa ... cttttttcagGATCTGGCTATTACTTCTGATGAGGCCTTGAGCTTGGAGGAGCTTCCAAAG