Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgaatcctcagcacatgagctctcttcttactatacaggtcgcgtggactctgaatagctgatggtctgtttttcgcagGGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAG

Basic information

species Zea mays
transcript GRMZM5G804772_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G804772_T03 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os08g44400.1 (Oryza sativa), 3'ss of exon 9
gtctgaatcctcagcacatgagctctctt---cttactat-----acaggtcgcg--tggactctgaa--tagctgatggtctgtttttcg-cagGGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAG
|||||||||||| ||| ||     |  ||    || |  |        | |  |     ||  | |||  |  | | ||     ||| ||  ||||||||||| ||||||||| ||||||||||||| ||||| || || || ||||||||  ||||||||||
gtctgaatcctctgcatattgatacgtttgcatttgccgtttcctgtggcttactgccagatccagaatctgaccggtgcatgctttatcatcagGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGCCACACTTGCTACACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89761247|gb|DY689341.1|DY689341
EST:     ACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGGGCATGTGAG                         GGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTG
genomic: ACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGGGCATGTGAGgtctgaatcc ... tttttcgcagGGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTG
EST: gi|211386828|gb|FL474653.1|FL474653
EST:     ACATGGCTTAAAAAGTCCCACCGCAGCCCATAGAGATATGGGCATGTGAG                         GGATTTCCCTTTTGTAAAATTAGTACGAGAGACCCTTGTCGAGTTGGAATT
genomic: ACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGGGCATGTGAGgtctgaatcc ... tttttcgcagGGATCTCCCTTCTGT-AAATTAGTACGAGAGACACTTGTCGAGTTGGAATT
EST: gi|149027058|gb|EE046379.2|EE046379
EST:     ACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGGGCATGTGAG                         GGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTG
genomic: ACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGGGCATGTGAGgtctgaatcc ... tttttcgcagGGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTG
EST: gi|76910497|gb|DV163897.1|DV163897
EST:     ACATTGCTTCAAAAGTCCCCCCGCAGCCCATAGAGATATGGGCATGTGAG                         GGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTG
genomic: ACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGGGCATGTGAGgtctgaatcc ... tttttcgcagGGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTG
EST: gi|60347885|gb|DN214858.1|DN214858
EST:     CCCACCGCGGCCCATAGAGATATGGGCATGTNAG                         GGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTG
genomic: CCCACCGCAGCCCATAGAGATATGGGCATGTGAGgtctgaatcc ... tttttcgcagGGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttactatacaggtcgcgtggactctgaatagctgatggtctgtttttcgcagGGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAG
                                         tctgtttttc  CT-rich tract
                                           tgttttt  TA-rich tract