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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaatactttaaaaccacaagtcactgaatggcatcagaattcagaacagcctgcaagctgttgctaaacttaacctagtagaattatcactttagttcagttcttctggactgagatatgtgctctgcaagagtgttagtaactagaagttactcctgcag

Basic information

species Zea mays
transcript GRMZM5G804772_T02
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G825090_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os08g44400.1 (Oryza sativa), 5'ss of exon 10
GGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaatactttaaaaccacaagtcactgaatggcatcagaattcagaacagcctgcaagctgttgctaaacttaacctagtagaattatcactttagttcagttcttctggactgagatatgtgctctgcaagagtg-ttagtaactagaagttactcctgcag
|||||||| ||||||||| ||||||||||||| ||||| || || || ||||||||  |||||||||||||  ||| | || |||    ||| | | ||  ||| ||    | ||          ||   | | ||   |   | |    ||  |  |  | | || ||   ||   | |    | ||  |    | | ||    ||||   | ||| ||  || || || | |   
GGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGCCACACTTGCTACACAGgtactcaata-acgtta----caccaatgacaaaattgct---ggatatgctgttagctatcatcagtgttttttcctgctgtaaaatcacaacc-ctgtatcacaaagccttgcaattgcaagcactacactcttggagtaactggtagctgaaaatttctgcag---

upper sequence: GRMZM5G825090_T02 (Zea mays), 5'ss of exon 10
lower sequence: LOC_Os08g44400.3 (Oryza sativa), 5'ss of exon 9
--------------------------------GGATCTCCCTTCTGTAAATTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaatactttaaaaccacaagtcactgaatggcatcagaattcagaacagcctgcaagctgttgctaaacttaacctagtagaattatcactttagttcagttcttctggactgagatatgtgctctgcaagagtg-ttagtaactagaagttactcctgcag
                                |||||||| ||||||||| ||||||||||||| ||||| || || || ||||||||  |||||||||||||  ||| | || |||    ||| | | ||  ||| ||    | ||          ||   | | ||   |   | |    ||  |  |  | | || ||   ||   | |    | ||  |    | | ||    ||||   | ||| ||  || || || | |   
CAGAATCTGACCGGTGCATGCTTTATCATCAGGGATCTCCTTTCTGTAAAATAGTACGAGAGACCCTTGTTGAATTAGAGTTGCCACACTTGCTACACAGgtactcaata-acgtta----caccaatgacaaaattgct---ggatatgctgttagctatcatcagtgttttttcctgctgtaaaatcacaacc-ctgtatcacaaagccttgcaattgcaagcactacactcttggagtaactggtagctgaaaatttctgcag---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89761247|gb|DY689341.1|DY689341
EST:     TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAG                         CTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
genomic: TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
EST: gi|211386828|gb|FL474653.1|FL474653
EST:     TTAGTACGAGAGACCCTTGTCGAGTTGGAATTGCCACATCTGCTACACAG                         CTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
genomic: TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
EST: gi|149027058|gb|EE046379.2|EE046379
EST:     TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAG                         CTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
genomic: TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
EST: gi|76910497|gb|DV163897.1|DV163897
EST:     TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATTTGCTACACAG                         CTGCGCCCGGGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
genomic: TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
EST: gi|60347885|gb|DN214858.1|DN214858
EST:     TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAG                         CTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
genomic: TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT