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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCCCAAGAGGTACGAGGTCAAGTCCGGCCAGGTGGGCAGCGTCCTCGGCGCCTCGCTCGCCATCCCCCTTCGCCTCGGCACCGGCGTCTTCGTCCTCGGgtacgcaccgcgccttctctcaccgtccgggcgtctacctcgcctacgggctacagcctgcacctgcttacctgcacgtgtcacttcaatgtgcag

Basic information

species Zea mays
transcript GRMZM5G804772_T02
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G804772_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os08g44400.3 (Oryza sativa), 5'ss of exon 1
AGCCCAAGAGGTACGAGGTCAAGTCCGGCCAGGTGGGCAGCGTCCTCGGCGCCTCGCTCGCCATCCCCCTTCGCCTCGGCACCGGCGTCTTCGTCCTCGGgtacgcaccgcgccttctctcaccgtccgggcgtctacctcgcctacgggctacagcctgcacctgcttacctgcacgtgtcacttcaatgtgcag-----------------------
|||||||||  | |||||| ||| ||||||||   | |  | || ||  |||||| |||||||| ||| | |||||||||||||||||||||| ||| ||||||        |  | |||               | |    ||||| |  |   |  |  |  | ||||     ||  |   | |  ||     |                       
AGCCCAAGACCTTCGAGGTGAAGCCCGGCCAGTCCGACGACATCGTCACCGCCTCCCTCGCCATTCCCTTCCGCCTCGGCACCGGCGTCTTCGCCCTTGGgtactttattttctatttctactgaatttattcgatccaatacctactgaattttgtttctaaat-cttattgttactcgattcatatattcatggccttggattcatttgatgtgcag