1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtatccaaaatactttaaaaccacaagtcactgaatggcatcagaattcagaacagcctgcaagctgttgctaaacttaacctagtagaattatcactttagttcagttcttctggactgagatatgtgctctgcaagagtgttagtaactagaagttactcctgcagCTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCTTTTCCAG
species | Zea mays |
transcript | GRMZM5G804772_T02 |
intron # | 10 |
splice site | 3' |
intron type | U2 |
EST: TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAG CTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCTEST: gi|211386828|gb|FL474653.1|FL474653
genomic: TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
EST: TTAGTACGAGAGACCCTTGTCGAGTTGGAATTGCCACATCTGCTACACAG CTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCTEST: gi|149027058|gb|EE046379.2|EE046379
genomic: TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
EST: TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAG CTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCTEST: gi|76910497|gb|DV163897.1|DV163897
genomic: TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
EST: TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATTTGCTACACAG CTGCGCCCGGGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCTEST: gi|60347885|gb|DN214858.1|DN214858
genomic: TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
EST: TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAG CTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
genomic: TTAGTACGAGAGACACTTGTCGAGTTGGAATTGCCACATCTGCTACACAGgtatccaaaa ... actcctgcagCTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCT
tggactgagatatgtgctctgcaagagtgttagtaactagaagttactcctgcagCTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCTTTTCCAG
tagtaac putative branch site (score: 1)
ttactcct putative PPT
ttagtaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccaaaatactttaaaaccacaagtcactgaatggcatcagaattcagaacagcctgcaagctgttgctaaacttaacctagtagaattatcactttagttcagttcttctggactgagatatgtgctctgcaagagtgttagtaactagaagttactcctgcagCTGCGCACGAGGCAGCCCCAAACGACAAGAATTTTTCAAGAAAAAGGGGCTTTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA