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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacagcatatcttgcttcttcctcctgtttataccatgctgagtaatcatgctgacttgtttcttctcttcattgttggtgtattcttgctaatcttcagTTGTCCATTTTGTCGGAAG

Basic information

species Zea mays
transcript GRMZM5G804772_T02
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76910497|gb|DV163897.1|DV163897
EST:     GAATTTGAAGG                         TTGTCCATTTTGTCGGAAG
genomic: GAATTTGAAGGgtacagcata ... taatcttcagTTGTCCATTTTGTCGGAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atcatgctgacttgtttcttctcttcattgttggtgtattcttgctaatcttcagTTGTCCATTTTGTCGGAAG
                                          tgctaat  putative branch site (score: 2)
                                      ttcttgct  CT-rich tract
                                    tattctt  TA-rich tract