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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacattgtgcaaaaacaatataacaaagttcgctgcgtgttttcctctggatgtttgctcagaaacgtgtggcattacgtcgttgtttacagGGAAATTCCTACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGGGCATGTGAG

Basic information

species Zea mays
transcript GRMZM5G804772_T02
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|89761247|gb|DY689341.1|DY689341
EST:     GCAATTACAGCAGGGCTTGCTACTCTTGGTCGTATTGGAAAG                         GGAAATTCCTACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGG
genomic: GCAATTACAGCAGGGCTTGCTACTCTTGGTCGTATTGGAAAGgtacattgtg ... ttgtttacagGGAAATTCCTACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGG
EST: gi|149027058|gb|EE046379.2|EE046379
EST:     TTGACAGCAATTACAGCAGGGCTTGTTTCTCTTGGTCGTATTGGAAAAG                         GGAAATTCCTACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATG
genomic: TTGACAGCAATTACAGCAGGGCTTGCTACTCTTGGTCGTATTGG-AAAGgtacattgtg ... ttgtttacagGGAAATTCCTACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATG
EST: gi|76910497|gb|DV163897.1|DV163897
EST:     GCAATTACAGCAGGGCTTGCTACTTTTGGTCGTATTGGAAAG                         GGAAATTCCTACATTGCTTCAAAAGTCCCCCCGCAGCCCATAGAGATATGG
genomic: GCAATTACAGCAGGGCTTGCTACTCTTGGTCGTATTGGAAAGgtacattgtg ... ttgtttacagGGAAATTCCTACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgttttcctctggatgtttgctcagaaacgtgtggcattacgtcgttgtttacagGGAAATTCCTACATTGCTTCAAAAGTCCCACCGCAGCCCATAGAGATATGGGCATGTGAG
                                             ttgttta  TA-rich tract