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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCTAGATGAAACAACTGGAGATGCAATACCAGAAAAGCTGGTAAAGGCACTAAATGCTTCTCGGAACATGTTTCCTGCTACTGAGCTCCAGAGGCAGgtatgtttttcgttgtagttcttaggctgtctccaacaatagccggtaaattgttctgtccgctacatatagcgttttcttccgtcctggctccgcccaa...

Basic information

species Zea mays
transcript GRMZM2G450659_T03
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G450659_T02 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os06g47210.1 (Oryza sativa), 5'ss of exon 15
TGCTCTAGATGAAACAACTGGAGATGCAATACCAGAAAAGCTGGTAAAGGCACTAAATGCTTCTCGGAACATGTTTCCTGCTACTGAGCTCCAGAGGCAGgtatgtttttcgttgtagttcttaggc--tgtctccaacaatagccggtaaattgttctgtcc------gctacatatagcgttttcttccgtcctggctccgcccaa---
|||| |||||||||||||||| ||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||| || || ||||| ||| | ||||| |||||||| ||||| ||||||        |   |||||| |    | |  |  | |||||      |||   | |  |  ||| |    |  || |||||  |     
TGCTGTAGATGAAACAACTGGTGATCCAATACCAGAAAAGTTGGTAAAGGCACTTAATGCTTCTCGGAACATGTTTCCAGCAACGGAGCTGCAGCGTCAGgtttgtttttctttgtacttcttatttctcacccttaacaattggatttgaccttgtatgtcccaatgtgctgtttctt-cactttgtgttattgtgcctccgttccccag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31360209|gb|CD444566.1|CD444566
EST:     GTTTCCTGCTACTGAGCTCCAGAGGCAG                         ATCTTCTACTCTATAATGGACCTAACCTTGTTTGGCGAGCAATCATCCAAG
genomic: GTTTCCTGCTACTGAGCTCCAGAGGCAGgtatgttttt ... cctttcccagATCTTCTACTCTATAATGGACCTAACCTTGTTTGGCGAGCAATCATCCAAG
EST: gi|31354813|gb|CD439170.1|CD439170
EST:     CACTAAATGCTTCTCGGAACATGTTTCCTGCTACTGAGCTCCAGAGGCAG                         ATCTTCTACTCTATAATGGACCTAACCTTGTTTGGCGAGCAATCATCCAAG
genomic: CACTAAATGCTTCTCGGAACATGTTTCCTGCTACTGAGCTCCAGAGGCAGgtatgttttt ... cctttcccagATCTTCTACTCTATAATGGACCTAACCTTGTTTGGCGAGCAATCATCCAAG
EST: gi|67025011|gb|CO453760.1|CO453760
EST:     GAGCTCCTGACGCAG                         ATCTTCTACTCTATAATGGACCTAACCTTGTTTGGCGAGCAATCATCCAAG
genomic: GAGCTCCAGAGGCAGgtatgttttt ... cctttcccagATCTTCTACTCTATAATGGACCTAACCTTGTTTGGCGAGCAATCATCCAAG