Sequence
atgc intronic sequence ATGC exonic sequencegtatgtgctaaactggcatctccgtgatgaaataactgtacctaaagcttatgttcaattctggtttgacatatactgcatgcatgcctgtagagtacagtccttacccttttgtttcgataagttattgacccccccccccccccctctgtttggcatctatcagGTTATTGCAAAATACTTTCCCTTGTCGCAGTGCCTAAAAGGGTTAAATGTTCTCGTTGAATCATTATTTGGTGCAACATTTCATCAAATTCCTATGAGGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G450659_T01 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os06g47210.1 (Oryza sativa), 3'ss of exon 10
gtatgtgctaaactggcatctccgtgatgaaataactgtacctaaagcttatgttcaattctggtttgacatatactgcatgcatgcctgtagagtacagtccttacccttttgtttcgataagttattgacccccccccccccc---cctctgtttggcatctatcagGTTATTGCAAAATACTTTCCCTTGTCGCAGTGCCTAAAAGGGTTAAATGTTCTCGTTGAATCATTATTTGGTGCAACATTTCATCAAATTCCTATGAGGG
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-----------------------------------------------------------------ttaatatatgtca-atgaaaaagt-taatgtgcggtgat--ccctttaacatcattgcatacttaaaattttgcccttttgggcatttttgaaatacctaacagGTGGTTGCAGCATACTTTCCATTGTCCCAGTGCCTAAAGGGCTTAAACGTGCTGGTGGAATCATTATTTGGTGCCACATTTCATCAAATTCCTATGGGGG
upper sequence: GRMZM2G450659_T01 (Zea mays), 3'ss of exon 4
lower sequence: AT5G51540.1 (Arabidopsis thaliana), 3'ss of exon 10
gtatgtgctaaactggcatctccgtgatgaaataactgtacctaaagcttatgttcaattctggtttgacatatactgcatgcatgcctgtagagtacagtccttacccttttgtttcgataagttattgacccccccccccccccctctgtttggcatctat-cagGTTATTGCAAAATACTTTCCCTTGTCGCAGTGCCTAAAAGGGTTAAATGTTCTCGTTGAATCATTATTTGGTGCAACATTTCATCAAATTCCTATGAGGG
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-------gtaagttgc--ttttgttatttatttttctattgttgtgctgcaaaagcacttcggcttctctatcttcattttgtatacttat-gggagctttttggttctttttacttctgttgctaagacttctcttgtcatgctctgttggaatattcttgtacagGTTGTAGCATCATATTTTCCTCTGCCACAGTGTATTGAAGGCCTAAAAGTGCTTGTTGAATCATTATTTGGTGCAACATTTCATACTATTCCTCTCGCGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|20811224|gb|BQ295702.1|BQ295702EST: ATTACTTCATTGGAATGATGAAATCATCTGTATATGACCTGGACGCTTCA GTTATTGCAAAATACTTTCCCTTGTCGCAGTGCCTAAAAGGGTTAAATGTT
genomic: ATTACTTCATTGGAATGATGAAATCATCTGTATATGACCTGGACGCTTCAgtatgtgcta ... catctatcagGTTATTGCAAAATACTTTCCCTTGTCGCAGTGCCTAAAAGGGTTAAATGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgtttcgataagttattgacccccccccccccccctctgtttggcatctatcagGTTATTGCAAAATACTTTCCCTTGTCGCAGTGCCTAAAAGGGTTAAATGTTCTCGTTGAATCATTATTTGGTGCAACATTTCATCAAATTCCTATGAGGG
tattgac putative branch site (score: 2)
cccccccccccccccc CT-rich tract
ataagttatt TA-rich tract