Sequence
atgc intronic sequence ATGC exonic sequenceTGAATCATTATTTGGTGCAACATTTCATCAAATTCCTATGAGGGATGGGGAGTCATGGCATCCAGATGTGATAAAGCTCCGTCTCCATCATCCTGATGAGgtacaaccatgtcaaccatgttttttaatgataattctacaacaaacatagaataaatacttttagcttctctgctttggttatttgtgtatgtgcccga...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G450659_T02 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os06g47210.1 (Oryza sativa), 5'ss of exon 11
TGAATCATTATTTGGTGCAACATTTCATCAAATTCCTATGAGGGATGGGGAGTCATGGCATCCAGATGTGATAAAGCTCCGTCTCCATCATCCTGATGAGgtacaaccatgtcaaccatgttttttaatgataattctacaacaaacatagaataaatacttttagcttctctgctttggttatttgt--gtatgtgcccga----
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GGAATCATTATTTGGTGCCACATTTCATCAAATTCCTATGGGGGACGGCGAGTCATGGCATCCAGATGTGATGAAGTTGTCTCTCCATCATCCTGATGAGgtactattgtgttaagcttagtttat-----tagttctata-taaaaaaatagtaaactactgcatcttacccaatctaactctacaaaagcatgtaactacatgc
upper sequence: GRMZM2G450659_T02 (Zea mays), 5'ss of exon 4
lower sequence: AT5G51540.1 (Arabidopsis thaliana), 5'ss of exon 11
TGAATCATTATTTGGTGCAACATTTCATCAAATTCCTATGAGGGATGGGGAGTCATGGCATCCAGATGTGATAAAGCTCCGTCTCCATCATCCTGATGAGgtaca------accatgtcaaccatgttttttaatgataattctaca-acaaacatag-aataaat-acttttagcttctctgctttggttatttgtgtatgtgcccga--------------------------------
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TGAATCATTATTTGGTGCAACATTTCATACTATTCCTCTCGCGCCAGGTGAATCTTGGCACCCAAATGTGGTTAAACTGTCTCTTCATCACCCGGACGAGgtatgttgttcacaaaactaagataatccttgcataagtcttgtagatataaacacaataatagttcattcctagatggccaattttttcgtagcatctttgttcccttgttctcacaaatcatgcgactgtctcttgcagMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|20811224|gb|BQ295702.1|BQ295702EST: AGTCATGGCATCCAGATGTGATAAAGCTCCGTCTCCATCATCCTGATGAG GGTGATTTAGGATTCATGTATCTGGACCTCTACTCCAGAAAGGGGAAACAT
genomic: AGTCATGGCATCCAGATGTGATAAAGCTCCGTCTCCATCATCCTGATGAGgtacaaccat ... tcatgaacagGGTGATTTAGGATTCATGTATCTGGACCTCTACTCCAGAAAGGGGAAACAT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TGAATCATTATTTGGTGCAACATTTCATCAAATTCCTATGAGGGATGGGGAGTCATGGCATCCAGATGTGATAAAGCTCCGTCTCCATCATCCTGATGAGgtacaaccatgtcaaccatgttttttaatgataattctacaacaaacatagaataaatacttttagcttctctgctttggttatttgtgtatgtgcccga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG