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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattttgcttgttcttaatatattagctccgctattacctttactgtagttacctggtagtatattgtatttgcagGAATATCAGCATTTCTCTGGTACTAGGGTTGCTCTTGATGTGGCTGAAACCCCCTCAAACCTATTTGA

Basic information

species Zea mays
transcript GRMZM2G450659_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G450659_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os06g47210.1 (Oryza sativa), 3'ss of exon 13
gtattttgc-----ttgttcttaatatattagctccgctattacctttactgtag-ttacctggtagtatattg-tatttgcagGAATATCAGCATTTCTCTGGTACTAGGGTTGCTCTTGATGTGGCTGAAACCCCCTCAAACCTATTTGA
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gtattttgctgtccttttttataatatttaggtctctccaatgactccaggattgcttatctgccagcataatgatatttgcagGAGTATCAACATTTCTCTGGTACTAGAGTTGCTCTTGATGTGGCTGAAATGCCATCAAACCTCTTTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31354813|gb|CD439170.1|CD439170
EST:     CCTTCACTCTCTGTTGTCAAGAACG                         GAATATCAGCCTTTCTCTGGTACTAGGGTTGCTCTTGATGTGGCTGAAACC
genomic: CCTTCACTCTCTGTTGTCAAGAACGgtattttgct ... gtatttgcagGAATATCAGCATTTCTCTGGTACTAGGGTTGCTCTTGATGTGGCTGAAACC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attagctccgctattacctttactgtagttacctggtagtatattgtatttgcagGAATATCAGCATTTCTCTGGTACTAGGGTTGCTCTTGATGTGGCTGAAACCCCCTCAAACCTATTTGA
                                    tagtatattgtattt  TA-rich tract