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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATATCAGCATTTCTCTGGTACTAGGGTTGCTCTTGATGTGGCTGAAACCCCCTCAAACCTATTTGAgtatgtacgagcttttaggttttacatacgatgacagtttactttgtagcacatctaattttggtttgttcaaaaataaggtatttttattgtcaacccatttgagttgagtttcattcacattacag

Basic information

species Zea mays
transcript GRMZM2G450659_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G450659_T02 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os06g47210.1 (Oryza sativa), 5'ss of exon 14
GAATATCAGCATTTCTCTGGTACTAGGGTTGCTCTTGATGTGGCTGAAACCCCCTCAAACCTATTTGAgtatgtacgagcttttaggttttacatacga---tgacagtttac---tttgtagcacatctaattttggtttgttcaaaaataaggtatttttattgtcaacccatttga------gttgagtttcattcacattacag
|| ||||| ||||||||||||||||| ||||||||||||||||||||||  || |||||||| |||||||| ||| ||  | ||  | |  | |||  |   |  |  || ||      | ||   |||||||| ||| || |  ||||   ||     ||| || |  |||   || |      ||||||||  ||||||||| |||
GAGTATCAACATTTCTCTGGTACTAGAGTTGCTCTTGATGTGGCTGAAATGCCATCAAACCTCTTTGAgtacgtatgacttgtt--gctaaaaataaaactttatccattaacactcccgcagggtatctaattctggcttatctaaaatacagcagcatttgttatttaccttctttatcagtagttgagttcaattcacattgcag

upper sequence: GRMZM2G450659_T02 (Zea mays), 5'ss of exon 7
lower sequence: Vv16s0022g01280.t01 (Vitis vinifera), 5'ss of exon 3
GAATATCAGCATTTCTCTGGTACTAGGGTTGCTCTTGATGTGGCTGAAACCCCCTCAAACCTATTTGAgtatgtacgagcttttaggttttacatacgatgacagtttactttgtagcacatctaattttggtttgttcaaaaataaggtatttttattgtcaacccatttgagttgagtttcattcacattacag
|| || || ||||| || ||||| ||||| | ||||||| |||||||||| || || |||||||||||||  |||    ||| |      || |    | |    |   | | |   |     | |  |   |   |  |  |||| |   ||||   ||     | |||||||   |||| ||            
GATTACCAACATTTTTCAGGTACAAGGGTGGTTCTTGATTTGGCTGAAACACCTTCGAACCTATTTGAgtgagta---acttctg----ctataactaaaggatttccccctcgactctgggattacctgcatgaatgtatgaatagg---ttttagctg-----ctatttgagc--agttacac-----------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31354813|gb|CD439170.1|CD439170
EST:     GGTACTAGGGTTGCTCTTGATGTGGCTGAAACCCCCTCAAACCTATTTGA                         ATATTATGCCTGGGACTATCGTGTCTTGAAGACATTTGCTCTAGATGAAAC
genomic: GGTACTAGGGTTGCTCTTGATGTGGCTGAAACCCCCTCAAACCTATTTGAgtatgtacga ... cacattacagATATTATGCCTGGGACTATCGTGTCTTGAAGACATTTGCTCTAGATGAAAC