Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ttaaagattctgattgctcttcaggttactttgtgtttataggtatgcattatctcacacttgtgtattcacattcctgagaaatgtttttgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAAACTTTGGTGCTTCAATCATGTTTGCAAG

Basic information

species Zea mays
transcript GRMZM2G178244_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G178244_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g64650.1 (Oryza sativa), 3'ss of exon 5
ttaaagattctgattgctcttcaggttactttgtgtttataggtatgcattatctcacacttgtgtattca-cattcctgagaaatgtt------tttgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAAACTTTGGTGCTTCAATCATGTTTGCAAG-------------
     ||  ||  ||    | ||   |  ||||| | |  || | |   ||   |  |  |||| |    |   ||  ||||  || ||       || |||| |||||||||||||||||||||||||| ||||||||||| || || ||||| | || |||||  |||   || |||    |||             
----ggaccctttttaacttaca---ttttttgtttgttaagttttatcttgattaccgtttgtctccagaattttgttgagggatattgtttttcttttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGAAGTTTGG-ACTT---TCCTGTCCTTAAGATGAAGACTCCAG

upper sequence: GRMZM2G178244_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g64650.2 (Oryza sativa), 3'ss of exon 5
ttaaagattctgattgctcttcaggttactttgtgtttataggtatgcattatctcacacttgtgtattca-cattcctgagaaatgt------ttttgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAAACTTTGGTGCTTCAATCATGTTTGCAAG-------------------------
     ||  ||  ||    | ||   |  ||||| | |  || | |   ||   |  |  |||| |    |   ||  ||||  || |      | || |||| |||||||||||||||||||||||||| ||||||||||| || || ||||| | || |||||  |||   || |||    |||                         
----ggaccctttttaacttaca---ttttttgtttgttaagttttatcttgattaccgtttgtctccagaattttgttgagggatattgtttttcttttcttccagATGTTCTACAAGCAGGCAAAGAAAACAAACCAATGCTGTACTATACTCTGAAGTTTGG-ACTT---TCCTGTCCTTAAGATGAAGACTCCAGGTTAATTTTGCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71760321|gb|DR958258.1|DR958258
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTTTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|211043823|gb|FL450886.1|FL450886
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|4827639|gb|AI668331.1|AI668331
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|40303527|gb|CK347914.1|CK347914
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|31351801|gb|CD436158.1|CD436158
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|148986861|gb|EE030663.2|EE030663
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|13381899|gb|BG458574.1|BG458574
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|29947409|gb|CB816642.1|CB816642
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|32831700|gb|CD971378.1|CD971378
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|149005487|gb|EE040045.2|EE040045
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGGTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|60351214|gb|DN218187.1|DN218187
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|148974489|gb|EE025272.2|EE025272
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|94478008|gb|EB706966.1|EB706966
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|211218979|gb|FL468672.1|FL468672
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|101401867|gb|EB822568.1|EB822568
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|83279031|gb|DV943039.1|DV943039
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|28982361|gb|BQ538108.2|BQ538108
EST:     CTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: CTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|78109501|gb|DV527917.1|DV527917
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|78027635|gb|DV496022.1|DV496022
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|211369239|gb|FK956903.1|FK956903
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|76933701|gb|DV173556.1|DV173556
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|32829971|gb|CD969649.1|CD969649
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAATGAAGACAAACCAATG-TGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|32831608|gb|CD971286.1|CD971286
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|76933699|gb|DV173555.1|DV173555
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|91054889|gb|EB165307.1|EB165307
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|148974488|gb|EE025271.2|EE025271
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATTTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|211369240|gb|FK956904.1|FK956904
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|60351615|gb|DN218588.1|DN218588
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|16916951|gb|BM073059.1|BM073059
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGCCAAACCAATGTTGCCCAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|60397788|gb|DN230604.1|DN230604
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|60394084|gb|DN226954.1|DN226954
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|148999174|gb|EE036091.2|EE036091
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|32830354|gb|CD970032.1|CD970032
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAANTG-TGCACAATACTTTA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAA-TGTTGCACAATACTTTA
EST: gi|71439602|gb|DR820652.1|DR820652
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|149081182|gb|EE170291.2|EE170291
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|45567196|gb|CK985452.1|CK985452
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
EST: gi|148999175|gb|EE036092.2|EE036092
EST:     GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAG                         ATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA
genomic: GATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 90

CATAAAACTATTGATAGTGTCCTGGCCAGAGGAGAGAGATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAAACTTTGGTGCTTCAATCATGTTTGCAAG


Block sizes: 49 (upstream exon), 48 (downstream exon)
Score: 128

CATAAAACTATTGATAGTGTCCTGGCCAGAGGAGAGAGATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAAACTTTGGTGCTTCAATCATGTTTGCAAG


Block sizes: 46 (upstream exon), 49 (downstream exon)
Score: 101

CATAAAACTATTGATAGTGTCCTGGCCAGAGGAGAGAGATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAAACTTTGGTGCTTCAATCATGTTTGCAAG


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 116

CATAAAACTATTGATAGTGTCCTGGCCAGAGGAGAGAGATTGGATAGCTTGGTTGAGAAAAGTTCTGATCTAAGTGCTGCTTCTCAGgtaatcctat ... tgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAAACTTTGGTGCTTCAATCATGTTTGCAAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcattatctcacacttgtgtattcacattcctgagaaatgtttttgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAAACTTTGGTGCTTCAATCATGTTTGCAAG
      atctcac  putative branch site (score: 116)
                                       tgtttttgtctttc  putative PPT
                                    aaatgttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ttaaagattctgattgctcttcaggttactttgtgtttataggtatgcattatctcacacttgtgtattcacattcctgagaaatgtttttgtctttcagATGTTCTACAAGCAGGCAAAGAAGACAAACCAATGTTGCACAATACTTTAAACTTTGGTGCTTCAATCATGTTTGCAAG

- - - - - tgattgc
- - - - - - - - - - - - - - - -tgtgttt
- - - - - - - - - - - - - - - - - - - - - gtatgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacattc