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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TACTTCCAGCGCAGCGCCGCCCGCGAGTTCATCGTCTTCGTTGCCCGCACCGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttcagatctgattggcttttggatcccatgaggagctccggggttcgcactaaattatccatatgtagccgtcggctatagatcaactggtag...

Basic information

species Zea mays
transcript GRMZM2G178244_T01
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G178244_T01 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g64650.1 (Oryza sativa), 5'ss of exon 1
TACTTCCAGCGCAGCGCCGCCCGCGAGTTCATCGTCTTCGTTGCCCGCACCGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttcagatctgattggctt--ttggatcccatgaggagctccggggtt-cgcactaaattatcc-atatgtagccgtcggctatagatcaactggtag--
| |||||||||  ||||||| || ||||||||||||||||| || ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||       | | |  || | | |  |  ||||       |  ||  ||| || |   ||   | | || ||    ||     | ||  | ||  ||| | |   
TTCTTCCAGCGGGGCGCCGCGCGGGAGTTCATCGTCTTCGTCGCGCGCACCGTCGCCCAGCGCACCCAGCCAGGCCAGCGCCAGTCCGTCCAGCACGAAGgtaa------acaacccatcgtcctcctcagatctgcctccgcacttagggtttgcttgctttctgacccgatgctcagatccggtcttcacatggacttggatta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31351801|gb|CD436158.1|CD436158
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|148986861|gb|EE030663.2|EE030663
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211253577|gb|FL134850.1|FL134850
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211371885|gb|FK956909.1|FK956909
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211369234|gb|FK956898.1|FK956898
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|76020500|gb|DT947670.1|DT947670
EST:     CGTCGCTCAGCGCACCCAGCCAGACCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211369238|gb|FK956902.1|FK956902
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211371893|gb|FK956917.1|FK956917
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211371889|gb|FK956913.1|FK956913
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|149005487|gb|EE040045.2|EE040045
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211371890|gb|FK956914.1|FK956914
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211374547|gb|FK956922.1|FK956922
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|148974489|gb|EE025272.2|EE025272
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|94478008|gb|EB706966.1|EB706966
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|101401867|gb|EB822568.1|EB822568
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211371887|gb|FK956911.1|FK956911
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|78109501|gb|DV527917.1|DV527917
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211151254|gb|FL134846.1|FL134846
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211371888|gb|FK956912.1|FK956912
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|30032025|gb|CB833876.1|CB833876
EST:     GTCGCTCTATTGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: GTCGCTC-AGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211369230|gb|FK956894.1|FK956894
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211369232|gb|FK956896.1|FK956896
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211253579|gb|FL134852.1|FL134852
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211371894|gb|FK956918.1|FK956918
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|76933701|gb|DV173556.1|DV173556
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211369235|gb|FK956899.1|FK956899
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|76933699|gb|DV173555.1|DV173555
EST:     CAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|91054889|gb|EB165307.1|EB165307
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|28873701|gb|CB329653.1|CB329653
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|60351615|gb|DN218588.1|DN218588
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211253581|gb|FL134854.1|FL134854
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211369231|gb|FK956895.1|FK956895
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|60397788|gb|DN230604.1|DN230604
EST:     AGTCCGTCCAGCACGAAG                         AATATAAGGTTCATTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: AGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211253576|gb|FL134849.1|FL134849
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|71439602|gb|DR820652.1|DR820652
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211371892|gb|FK956916.1|FK956916
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|149081182|gb|EE170291.2|EE170291
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211371891|gb|FK956915.1|FK956915
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|148999175|gb|EE036092.2|EE036092
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211253578|gb|FL134851.1|FL134851
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAA                         AATATNAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA