Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cataacatatggctgaccctgtttgctttggagatttggaatacatttttgttgtccatttccgcatgctgttttgacatacaatctcttcccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG

Basic information

species Zea mays
transcript GRMZM2G178244_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G178244_T01 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os01g64650.1 (Oryza sativa), 3'ss of exon 1
cataacatatggctgaccctgtttgctttggagatttggaatacatt-tttgttgtccatttccgcatgctgttttgacatacaatctcttcccattt-cagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG
 ||      | | ||  | | || | | | | |||  |||  |     |||| |||   ||   | | | |  | | | | |   | || |   |||| ||||||| ||||| ||||| |||||||| ||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
aatctgcagtcgatgttcattttcggtctagtgatcaggagaattcagtttgctgtt-gttaatgaacggtcatgtaa-acaagttgtcctgatatttgcagAATACAAGGTCCACTCACACAACAGGAATGGTCTTTGCGCAGTTGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATAAG

upper sequence: GRMZM2G178244_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA13G19950.1 (Glycine max), 3'ss of exon 1
--cataacatatggctgaccctgtt-tgctttggagatttggaatacatttttgttgtccatttccgcatgctgttttgacatacaatctcttcccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG
   |||| |||||  | |   | |  |  |||     |||     |  | || | | ||  | |  |  | |||| |     ||   ||| | |    | |||| || ||||| ||| |  ||||||||||||| ||||| ||| ||| ||||||||||||||| || ||  | || ||||| ||||||||||| || |||
ataataatatatgttttaatatctggtaatttctttgttttcctgaagtgttcgatctct-tgtttgttt-ctgtgtaagtttatt-tctttcctgtctgcagAGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAG

upper sequence: GRMZM2G178244_T01 (Zea mays), 3'ss of exon 1
lower sequence: GLYMA09G13840.1 (Glycine max), 3'ss of exon 1
cataacatatggctgaccctgtttgctttggagatttggaatacatttttgttgtccatttccgcatgct-----gttttgacatacaatctcttcccattt-cagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG
    | |   |  |     | || | ||||  | || |  ||   |||||||||   | ||  | | | |       ||    ||  | |   ||    ||| |||| || ||||| ||| |  ||||||| ||||| ||||| ||| ||| ||||||||||||||| || ||  | || ||||| ||||||||||| ||||||
----ataaccgttttgatatcttggttttgccggttcg--atttctttttgttgcaaaattgtgtaagtttgaaaacttatttatttatttattttatgtttgcagAGTACAAGGTGCACACATACAACAGGAATGGTCTTTGCGCGTTGGGATTTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAG

upper sequence: GRMZM2G178244_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv14s0060g00090.t01 (Vitis vinifera), 3'ss of exon 1
cataacatatggctgaccctgtttgctttggagatttggaatacatttttgttgtccat-ttccgcatgctgttttgacatacaatctcttcc---catttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG
                           ||| |  ||         |||| | | |||||  | | | | || ||||||||||     | ||       ||| |||||| |||||||| ||  ||||||||||||| || || ||  |||  |||||||||||  |||| || || |||||||| ||||||||||| ||  ||
--------------------------gttgcaccttca----tttttttagctttccatgcttctctttcttttttgacataattcttattttgtttgttttagAATACAAGGTTCATTCTTACAACAGAAATGGCCTCTGCGCTTTGGGCTTTATGGATGACAACTACCCAGTGCGAAGTGCCTTTTCTCTTCTCAACAAG

upper sequence: GRMZM2G178244_T01 (Zea mays), 3'ss of exon 1
lower sequence: Vv11s0206g00130.t01 (Vitis vinifera), 3'ss of exon 1
cataacatatggctgaccctgtttgctttggagatttggaatacatttttgttgtc-catttccgcatgctgttttgacatacaatctcttcccattt---cagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG
       | |  |          |  |||| |  ||| || ||  || ||||       ||| |   ||    |     |||   | |  |  | |||    ||||||||| || || ||  ||||||||||||| ||||||||  |||  ||||||||||| ||||||||||| ||||| ||||||||  | || || |||
---gttttgtttcctgtggaaagtcttttgtatgttttga-tatgttattgtgaagatgttttcttttgtaaatgctgaatattctttggtggcttttatatagAATATAAAGTGCATTCTTACAACAGAAATGGTCTTTGTGCACTGGGTTTTATGGATGACCACTATCCTGTTCGAAGCGCATTTTCCTTGCTCAACCAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31351801|gb|CD436158.1|CD436158
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|148986861|gb|EE030663.2|EE030663
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211253577|gb|FL134850.1|FL134850
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211371885|gb|FK956909.1|FK956909
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211369234|gb|FK956898.1|FK956898
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|76020500|gb|DT947670.1|DT947670
EST:     CGTCGCTCAGCGCACCCAGCCAGACCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211369238|gb|FK956902.1|FK956902
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211371893|gb|FK956917.1|FK956917
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211371889|gb|FK956913.1|FK956913
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|149005487|gb|EE040045.2|EE040045
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211371890|gb|FK956914.1|FK956914
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211374547|gb|FK956922.1|FK956922
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|148974489|gb|EE025272.2|EE025272
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|94478008|gb|EB706966.1|EB706966
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|101401867|gb|EB822568.1|EB822568
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211371887|gb|FK956911.1|FK956911
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|78109501|gb|DV527917.1|DV527917
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211151254|gb|FL134846.1|FL134846
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211371888|gb|FK956912.1|FK956912
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|30032025|gb|CB833876.1|CB833876
EST:     GTCGCTCTATTGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: GTCGCTC-AGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211369230|gb|FK956894.1|FK956894
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211369232|gb|FK956896.1|FK956896
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211253579|gb|FL134852.1|FL134852
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211371894|gb|FK956918.1|FK956918
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|76933701|gb|DV173556.1|DV173556
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211369235|gb|FK956899.1|FK956899
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|76933699|gb|DV173555.1|DV173555
EST:     CAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|91054889|gb|EB165307.1|EB165307
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|28873701|gb|CB329653.1|CB329653
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|60351615|gb|DN218588.1|DN218588
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211253581|gb|FL134854.1|FL134854
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211369231|gb|FK956895.1|FK956895
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|60397788|gb|DN230604.1|DN230604
EST:     AGTCCGTCCAGCACGAAG                         AATATAAGGTTCATTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: AGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211253576|gb|FL134849.1|FL134849
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|71439602|gb|DR820652.1|DR820652
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211371892|gb|FK956916.1|FK956916
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|149081182|gb|EE170291.2|EE170291
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211371891|gb|FK956915.1|FK956915
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|148999175|gb|EE036092.2|EE036092
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAG                         AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
EST: gi|211253578|gb|FL134851.1|FL134851
EST:     CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAA                         AATATNAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA
genomic: CGTCGCTCAGCGCACCCAGCCAGGCCAGCGGCAGTCCGTCCAGCACGAAGgtacctcttc ... cccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgttgtccatttccgcatgctgttttgacatacaatctcttcccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG
                          ttttgac  putative branch site (score: 3)
                                       tctcttcccatttc  putative PPT
                                 atacaat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cataacatatggctgaccctgtttgctttggagatttggaatacatttttgttgtccatttccgcatgctgttttgacatacaatctcttcccatttcagAATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG

- - - - - -gctgacc
- - - - - - - - - -tgtttgc
- - - - - - - - - - - - - - - - - - - - - - - -tttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catacaa