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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgaccatgattcctgagattcccacatgtctttgcttttggttgaagttgagtttaccaattgtaagttgtagccagtcatttctcacccagttct...

Basic information

species Zea mays
transcript GRMZM2G178244_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G178244_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g64650.1 (Oryza sativa), 5'ss of exon 2
AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgaccatgattcctgagattcccacatgtctttgcttttggttgaagttgagtttaccaattgtaagttgtagccagtcatttctcacccagttct-
|||| ||||| ||||| |||||||| ||||| ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    || |  ||| ||| |||||   ||  | |  | ||   ||  |  |  | | |  | |   |||   ||     |  | ||    | | |    
AATACAAGGTCCACTCACACAACAGGAATGGTCTTTGCGCAGTTGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATAAGgtatgagcctttgttcttgacattcctgtattgcatatccttgtatttgacctaggatcag-attcacaagcaataagggattgtctccttgctattctca

upper sequence: GRMZM2G178244_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA13G19950.1 (Glycine max), 5'ss of exon 2
AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgaccatgattcctg--agattcccacatgtctttgcttttggttgaagttgagtttaccaattgtaagttgtagccagtcatttctcacccagttct--
| || ||||| ||| |  ||||||||||||| ||||| ||| ||| ||||||||||||||| || ||  | || ||||| ||||||||||| || |||||   |||   |||  |||   ||||    | ||  |  |  ||      | |||   ||      ||   |    |||  ||  |||  |          |  
AGTACAAGGTGCACACATACAACAGAAATGGTCTTTGCGCGTTGGGATTTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAACCAGgtga-gactcagatcactgttggatttttgc-tgcttccgtattcaagacatgtta--ttcgttgctttggaaaattaggaagatattgtttgaaggtgcatga

upper sequence: GRMZM2G178244_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA09G13840.1 (Glycine max), 5'ss of exon 2
AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgaccatgattcctgagattcccacatgtctttgcttttggttgaagttgagtttaccaattgtaagttgtagccagtcatttctcacccagttct-----
| || ||||| ||| |  ||||||| ||||| ||||| ||| ||| ||||||||||||||| || ||  | || ||||| ||||||||||| ||||||||   |||   |||  | |    |        ||  |||| |    |  | |||  || |   | | |   |  |  |      | | | |   | || |     
AGTACAAGGTGCACACATACAACAGGAATGGTCTTTGCGCGTTGGGATTTATGGATGATCATTACCCGATTCGGAGTGCGTTTTCTCTTCTCAATCAGgtga-gactcagataaccg----tttattggttcagtgctatattgtatatttgtattcatggaattttgttgcttcctttgtgtctataaggaacttttttcat

upper sequence: GRMZM2G178244_T01 (Zea mays), 5'ss of exon 2
lower sequence: Vv11s0206g00130.t01 (Vitis vinifera), 5'ss of exon 2
AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgaccatgattcctgagattcccacatgtctttgcttttggttgaagttgagtttaccaatt--gtaagttgtagccagtcatttctcacccagttct
||||||| || || ||  ||||||||||||| ||||||||  |||  ||||||||||| ||||||||||| ||||| ||||||||  | || || ||||||    |||   ||  ||   || |    | | |||  ||       || || || | |   ||   | |   | ||     |   || | |  ||     
AATATAAAGTGCATTCTTACAACAGAAATGGTCTTTGTGCACTGGGTTTTATGGATGACCACTATCCTGTTCGAAGCGCATTTTCCTTGCTCAACCAGgtaa-acccaatttttatggctttactgtctttgtttttttcaaaagaaatttcagataattgatctggcatactttatttcttttgttttaagtcaacca-

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|40303527|gb|CK347914.1|CK347914
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACACCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|31351801|gb|CD436158.1|CD436158
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCCTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|148986861|gb|EE030663.2|EE030663
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|211253577|gb|FL134850.1|FL134850
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|211371885|gb|FK956909.1|FK956909
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGAATCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|211369234|gb|FK956898.1|FK956898
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGAATCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|76020500|gb|DT947670.1|DT947670
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|13381899|gb|BG458574.1|BG458574
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|211369238|gb|FK956902.1|FK956902
EST:     TTATGGATGATCACTATCCTGTACGAA-TGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGAATCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|211371893|gb|FK956917.1|FK956917
EST:     TTATGGATGATCACTAYCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGAATCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|149005487|gb|EE040045.2|EE040045
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|60351214|gb|DN218187.1|DN218187
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|211371890|gb|FK956914.1|FK956914
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTT-CTCTTCTGAATCAG                         GTTCTTGATGAGT-CCAGAAGGCTTTTGGGGA
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGA
EST: gi|211374547|gb|FK956922.1|FK956922
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGAATCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|148974489|gb|EE025272.2|EE025272
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|94478008|gb|EB706966.1|EB706966
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|101401867|gb|EB822568.1|EB822568
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|211371887|gb|FK956911.1|FK956911
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGAATCCTGGAAAATCTGCTAC
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAA-TCTGCTAC
EST: gi|78109501|gb|DV527917.1|DV527917
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|211151254|gb|FL134846.1|FL134846
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|166511315|gb|EG321369.1|EG321369
EST:     CTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGAATCCTGGAAATCTGCTACT
genomic: CTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|30032025|gb|CB833876.1|CB833876
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|211369230|gb|FK956894.1|FK956894
EST:     TTATGGATGATCACTATCCTGTACGTAGTGCATTT-CTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGAATCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|211369232|gb|FK956896.1|FK956896
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGAATCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|78027635|gb|DV496022.1|DV496022
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGAATCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|211253579|gb|FL134852.1|FL134852
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAN                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|211371894|gb|FK956918.1|FK956918
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGAATCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|76933701|gb|DV173556.1|DV173556
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|211369235|gb|FK956899.1|FK956899
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGAATCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|76933699|gb|DV173555.1|DV173555
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|91054889|gb|EB165307.1|EB165307
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|148974488|gb|EE025271.2|EE025271
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|28873701|gb|CB329653.1|CB329653
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|60351615|gb|DN218588.1|DN218588
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCCTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|211253581|gb|FL134854.1|FL134854
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|211369231|gb|FK956895.1|FK956895
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGAATCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|60397788|gb|DN230604.1|DN230604
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGAATCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|60394084|gb|DN226954.1|DN226954
EST:     TATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|148999174|gb|EE036091.2|EE036091
EST:     ATCACTTTCCCGTTCGAAGGGCATTTTCTTTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: ATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|211253576|gb|FL134849.1|FL134849
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|71439602|gb|DR820652.1|DR820652
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|211371892|gb|FK956916.1|FK956916
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGAATCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|149081182|gb|EE170291.2|EE170291
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|211371891|gb|FK956915.1|FK956915
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGAATCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|148999175|gb|EE036092.2|EE036092
EST:     TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
EST: gi|211253578|gb|FL134851.1|FL134851
EST:     TATGGATGATCACTATNCCTGTACGAAGTGCATTTTCTCTTCTGAATCAG                         GTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT
genomic: TATGGATGATCACTAT-CCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 45 (upstream exon), 48 (downstream exon)
Score: 91

AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACTGCAGATGGAACTCAACAGTGGGCTTTCCTGACAGACGCCTTGGCAAGAT


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 203

AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACTGCAGATGGAACTCAACAGTGGGCTTTCCTGACAGACGCCTTGGCAAGAT


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 214

AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACTGCAGATGGAACTCAACAGTGGGCTTTCCTGACAGACGCCTTGGCAAGAT


Block sizes: 48 (upstream exon), 48 (downstream exon)
Score: 180

AATATAAGGTTCACTCCCACAACAGAAATGGGCTTTGTGCGGTGGCATTTATGGATGATCACTATCCTGTACGAAGTGCATTTTCTCTTCTGAATCAGgtaccgacca ... tttcatgaagGTTCTTGATGAGTACCAGAAGGCTTTTGGGGACTCCTGGAAATCTGCTACTGCAGATGGAACTCAACAGTGGGCTTTCCTGACAGACGCCTTGGCAAGAT