1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aaatgatgtgcaataagaaagctcactcttatggattttttcacttccaagttatattttcccaaatatcagtctaaacacaattcttctttcgctgtagTTCCCAAGATTGTTTAATCAAAGTATGGGAAACTTCTCAGGGAAAGTTGGTCAAAACATTGAAG
species | Zea mays |
transcript | GRMZM2G157034_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AGTTCAGTGACCTGTGTCAAGTGGGGTGGAGATGGTTTGATTTATACTGG TTCCCAAGATTGTTTAATCAAAGTATGGGAAACTTCTCAGGGAAAGTTGGTEST: gi|211305746|gb|FK970549.1|FK970549
genomic: AGTTCAGTGACCTGTGTCAAGTGGGGTGGAGATGGTTTGATTTATACTGGgtaagacatg ... ttcgctgtagTTCCCAAGATTGTTTAATCAAAGTATGGGAAACTTCTCAGGGAAAGTTGGT
EST: AGTTCAGTGACCTGTGTCAAGTGGGGTGGAGATGGTTTGATTTATACTGG TTCCCAAGATTGTTTAATCAAAGTATGGGAAACTTCTCAGGGAAAGTTGGTEST: gi|50328574|gb|CO523700.1|CO523700
genomic: AGTTCAGTGACCTGTGTCAAGTGGGGTGGAGATGGTTTGATTTATACTGGgtaagacatg ... ttcgctgtagTTCCCAAGATTGTTTAATCAAAGTATGGGAAACTTCTCAGGGAAAGTTGGT
EST: AGTTCAGTGACCTGTGTCAAGTGGGGTGGAGATGGTTTGATTTATACTGG TTCCCAAGATTGTTTAATCAAAGTATGGGAAACTTCTCAGGGAAAGTTGGTEST: gi|32939016|gb|CF043835.1|CF043835
genomic: AGTTCAGTGACCTGTGTCAAGTGGGGTGGAGATGGTTTGATTTATACTGGgtaagacatg ... ttcgctgtagTTCCCAAGATTGTTTAATCAAAGTATGGGAAACTTCTCAGGGAAAGTTGGT
EST: GATGGTTTGATTTATACTGG TTCCCAAGATTGTTTAATCAAAGTATGGGAAACTTCTCAGGGAAAGTTGGTEST: gi|32930416|gb|CF035228.1|CF035228
genomic: GATGGTTTGATTTATACTGGgtaagacatg ... ttcgctgtagTTCCCAAGATTGTTTAATCAAAGTATGGGAAACTTCTCAGGGAAAGTTGGT
EST: AGTTCAGTGACCTGTGTCAAGTGGGGTGGAGATGGTTTGATTTATACTGG GEST: gi|32930416|gb|CF035228.1|CF035228
genomic: AGTTCAGTGACCTGTGTCAAGTGGGGTGGAGATGGTTTGATTTATACTGGgtaagacatg ... ttcgctgtag-
EST: AGTTCAGTGACCTGTGTCAAGTGGGGTGGAGATGGTTTGATTTATACTGG G
genomic: AGTTCAGTGACCTGTGTCAAGTGGGGTGGAGATGGTTTGATTTATACTGGgtaagacatg ... ttcgctgtag-
tccaagttatattttcccaaatatcagtctaaacacaattcttctttcgctgtagTTCCCAAGATTGTTTAATCAAAGTATGGGAAACTTCTCAGGGAAAGTTGGTCAAAACATTGAAG
gtctaaa putative branch site (score: 3)
ttcttctttcgctgt putative PPT
ttatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatgatgtgcaataagaaagctcactcttatggattttttcacttccaagttatattttcccaaatatcagtctaaacacaattcttctttcgctgtagTTCCCAAGATTGTTTAATCAAAGTATGGGAAACTTCTCAGGGAAAGTTGGTCAAAACATTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG