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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aggttgggcgagctgcattttaattttggccggttgctgcatgcaaccaaacaatatgtttctccttgaatggtctattcacaatcttctctttctgcagGCCACACGGAAGCTGTAATTGCTGTTTCTTTTAGCCCTGATGGAAAGAGTTTGGCGAGCGGTTCAGGTGACACCACTGTTCGCTTTTGGGACCTGAGTAC

Basic information

species Zea mays
transcript GRMZM2G157034_T01
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148969156|gb|EE019897.2|EE019897
EST:     AGCACTTTTCCGGATCAGGCCGGTCAACCGATGCTCTGCCACGATTGCTG                         GCCACACGGAAGCTGTAATTGCTGTTTCTTTTAGCCCTGATGGAAAGAGTT
genomic: AGCACTTTTCCGGATCAGGCCGGTCAACCGATGCTCTGCCACGATTGCTGgtatgtctag ... ctttctgcagGCCACACGGAAGCTGTAATTGCTGTTTCTTTTAGCCCTGATGGAAAGAGTT
EST: gi|149042078|gb|EE047056.2|EE047056
EST:     AGCACTTTTCCGGATCAGGCCGGTCAACCGATGCTCTGCCACGATTGCTG                         GCCACACGGAAGCTGTAATTGCTGTTTCTTTTAGCCCTGATGGAAAGAGTT
genomic: AGCACTTTTCCGGATCAGGCCGGTCAACCGATGCTCTGCCACGATTGCTGgtatgtctag ... ctttctgcagGCCACACGGAAGCTGTAATTGCTGTTTCTTTTAGCCCTGATGGAAAGAGTT
EST: gi|148960783|gb|EE011443.2|EE011443
EST:     AGCACTTTTCCGGATCAGGCCGGTCAACCGATGCTCTGCCACGATTGCTG                         GCCACACGGAAGCTGTAATTGCTGTTTCTTTTACCCCTGATGGAAAGAGTT
genomic: AGCACTTTTCCGGATCAGGCCGGTCAACCGATGCTCTGCCACGATTGCTGgtatgtctag ... ctttctgcagGCCACACGGAAGCTGTAATTGCTGTTTCTTTTAGCCCTGATGGAAAGAGTT
EST: gi|148939524|gb|EC884116.2|EC884116
EST:     AGCACTTTTCCGGATCAGGCCGGTCAACCGATGCTCTGCCACGATTGCTG                         GCCACACGGAAGCTGTAATTGCTGTTTCTTTTAGCCCTGATGGAAAGAGTT
genomic: AGCACTTTTCCGGATCAGGCCGGTCAACCGATGCTCTGCCACGATTGCTGgtatgtctag ... ctttctgcagGCCACACGGAAGCTGTAATTGCTGTTTCTTTTAGCCCTGATGGAAAGAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

accaaacaatatgtttctccttgaatggtctattcacaatcttctctttctgcagGCCACACGGAAGCTGTAATTGCTGTTTCTTTTAGCCCTGATGGAAAGAGTTTGGCGAGCGGTTCAGGTGACACCACTGTTCGCTTTTGGGACCTGAGTAC
                                       tcttctctttctgc  CT-rich tract
       aatatgttt  TA-rich tract