1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...atttgaacccattaggaaaggctatcatatttgtgcaatctttgttgcacttctgtgcattgcacttctcatatgctgtttctaacctttcattttccagGACACAAAAATTGGGTTCTCTGTATTGCATGGTCACCTGATGGAAAACATCTTGTTAGTGGTAGCAAGTCGGGAGAACTTATATTATGGGACCCAAAAAC
species | Zea mays |
transcript | GRMZM2G157034_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTACACAGACTCCACTGTTCACATGCAAAG GACACAAAAATTGGGTTCTCTGCATTGCATGGTCACCTGATGGAAAACATCEST: gi|50328574|gb|CO523700.1|CO523700
genomic: GTACACAGACTCCACTGTTCACATGCAAAGgtgaatgctc ... cattttccagGACACAAAAATTGGGTTCTCTGTATTGCATGGTCACCTGATGGAAAACATC
EST: TGTTCGCTTTTGGGACCTGAATACACAGACTCCACTGTTCACATGCAAAG GACACAAAAATTGGGTTCTCTGTATTGCATGGTCACCTGATGGAAAACATCEST: gi|148969156|gb|EE019897.2|EE019897
genomic: TGTTCGCTTTTGGGACCTGAGTACACAGACTCCACTGTTCACATGCAAAGgtgaatgctc ... cattttccagGACACAAAAATTGGGTTCTCTGTATTGCATGGTCACCTGATGGAAAACATC
EST: TGTTCGCTTTTGGGACCTGAGTACACAGACTCCACTGTTCACATGCAAAG GACACAAAAATTGGGTTCTCTGTATTGCATGGTCACCTGATGGAAAACATCEST: gi|32930416|gb|CF035228.1|CF035228
genomic: TGTTCGCTTTTGGGACCTGAGTACACAGACTCCACTGTTCACATGCAAAGgtgaatgctc ... cattttccagGACACAAAAATTGGGTTCTCTGTATTGCATGGTCACCTGATGGAAAACATC
EST: ACACAGACTCCACTGTTCACATGCAAAG GACACAAAAATTGGGTTCTCTGCATTGCATGGTCACCTGATGGAAAACATCEST: gi|149042078|gb|EE047056.2|EE047056
genomic: ACACAGACTCCACTGTTCACATGCAAAGgtgaatgctc ... cattttccagGACACAAAAATTGGGTTCTCTGTATTGCATGGTCACCTGATGGAAAACATC
EST: TGTTCGCTTTTGGGACCTGAGTACACAGACTCCACTGTTCACATGCAAAG GACACAAAAATTGGGTTCTCTGTATTGCATGGTCACCTGATGGAAAACATCEST: gi|148939524|gb|EC884116.2|EC884116
genomic: TGTTCGCTTTTGGGACCTGAGTACACAGACTCCACTGTTCACATGCAAAGgtgaatgctc ... cattttccagGACACAAAAATTGGGTTCTCTGTATTGCATGGTCACCTGATGGAAAACATC
EST: TGTTCGCTTTTGGGACCTGAGTACACAGACTCCACTGTTCACATGCAAAG GACACAAAAATTGGGTTCTCTGTATTGCATGGTCACCTGATGGAAAACATC
genomic: TGTTCGCTTTTGGGACCTGAGTACACAGACTCCACTGTTCACATGCAAAGgtgaatgctc ... cattttccagGACACAAAAATTGGGTTCTCTGTATTGCATGGTCACCTGATGGAAAACATC
tgcacttctgtgcattgcacttctcatatgctgtttctaacctttcattttccagGACACAAAAATTGGGTTCTCTGTATTGCATGGTCACCTGATGGAAAACATCTTGTTAGTGGTAGCAAGTCGGGAGAACTTATATTATGGGACCCAAAAAC
ttctaac putative branch site (score: 1)
cctttcattttcc CT-rich tract
tttcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttgaacccattaggaaaggctatcatatttgtgcaatctttgttgcacttctgtgcattgcacttctcatatgctgtttctaacctttcattttccagGACACAAAAATTGGGTTCTCTGTATTGCATGGTCACCTGATGGAAAACATCTTGTTAGTGGTAGCAAGTCGGGAGAACTTATATTATGGGACCCAAAAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA