1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtacgctcgctcacttgcatcggtttcttctcttcccacgcttctattcagagcataacagttgctaatccccttgttgcgctagCTTAATCTTAGATTTTGCTTCGGGTTCGGCTAAATTTCGTCGGATGGATATCGATGCCAGCGCCAGCGTCATGTGCCAGCTGCTGAGCCCCGAGGGAGAC
species | Zea mays |
transcript | GRMZM2G157034_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCAGCAGAAGCTGCTTGCACCGCCGCCGCCGCCCTCTTCCTGTTCTACTG CTTAATCTTAGATTTTGCTTCGGGTTCGGCTAAATTTCGTCGGATGGATATEST: gi|149042078|gb|EE047056.2|EE047056
genomic: TCAGCAGAAGCTGCTTGCACCGCCGCCGCCGCCCTCTTCCTGTTCTACTGgtacgctcgc ... gttgcgctagCTTAATCTTAGATTTTGCTTCGGGTTCGGCTAAATTTCGTCGGATGGATAT
EST: TCAGCAGAAGCTGCTTGCACCGCCGCCGCCGCCCTCTTCCTGTTCTACTG CTTAATCTTAGATTTTGCTTCGGGTTCGGCTAAATTTCGTCGGATGGATATEST: gi|148960783|gb|EE011443.2|EE011443
genomic: TCAGCAGAAGCTGCTTGCACCGCCGCCGCCGCCCTCTTCCTGTTCTACTGgtacgctcgc ... gttgcgctagCTTAATCTTAGATTTTGCTTCGGGTTCGGCTAAATTTCGTCGGATGGATAT
EST: TCAGCAGAAGCTGCTTGCACCGCCGCCGCCGCCCTCTTCCTGTTCTACTG CTTAATCTTAGATTTTGCTTCGGGTTCGGCTAAATTTCGTCGGATGGATATEST: gi|148939524|gb|EC884116.2|EC884116
genomic: TCAGCAGAAGCTGCTTGCACCGCCGCCGCCGCCCTCTTCCTGTTCTACTGgtacgctcgc ... gttgcgctagCTTAATCTTAGATTTTGCTTCGGGTTCGGCTAAATTTCGTCGGATGGATAT
EST: TCAGCAGAAGCTGCTTGCACCGCCGCCGCCGCCCTCTTCCTGTTCTACTG CTTAATCTTAGATTTTGCTTCGGGTTCGGCTAAATTTCGTCGGATGGATATEST: gi|37417485|gb|CF646397.1|CF646397
genomic: TCAGCAGAAGCTGCTTGCACCGCCGCCGCCGCCCTCTTCCTGTTCTACTGgtacgctcgc ... gttgcgctagCTTAATCTTAGATTTTGCTTCGGGTTCGGCTAAATTTCGTCGGATGGATAT
EST: TCAGCAGAAGCTGCTTGCACCGCCGCCGCCGCCCTCTTCCTGTTCTACTG CTTAATCTTAGATTTTGCTTCGGGTTCGGCTAAATTTCGTCGGATGGATAT
genomic: TCAGCAGAAGCTGCTTGCACCGCCGCCGCCGCCCTCTTCCTGTTCTACTGgtacgctcgc ... gttgcgctagCTTAATCTTAGATTTTGCTTCGGGTTCGGCTAAATTTCGTCGGATGGATAT
tcttcccacgcttctattcagagcataacagttgctaatccccttgttgcgctagCTTAATCTTAGATTTTGCTTCGGGTTCGGCTAAATTTCGTCGGATGGATATCGATGCCAGCGCCAGCGTCATGTGCCAGCTGCTGAGCCCCGAGGGAGAC
tgctaat putative branch site (score: 5)
tccccttgtt CT-rich tract
ttctatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgctcgctcacttgcatcggtttcttctcttcccacgcttctattcagagcataacagttgctaatccccttgttgcgctagCTTAATCTTAGATTTTGCTTCGGGTTCGGCTAAATTTCGTCGGATGGATATCGATGCCAGCGCCAGCGTCATGTGCCAGCTGCTGAGCCCCGAGGGAGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT