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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGGGTGAATTCGCTTGCTTTGAGCACGGAATATGTTCTCCGTACTGGAGCATATGACCACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAGgtatattgatggcactttgttttgttgtctatcctaatagcaaattagttttggctcaagattacatataatatatgttggcctttttttttatataaatgttatgttttggaatgtttttcctcctcacctgagaaccttttgtatttag

Basic information

species Zea mays
transcript GRMZM2G157034_T01
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211305746|gb|FK970549.1|FK970549
EST:     CATATGACCACACTGGCAAGACATTTTCAACTGCAGAGGAAATGAAAGAG                         GCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGA--CTA
genomic: CATATGACCACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAGgtatattgat ... ttgtatttagGCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
EST: gi|50328574|gb|CO523700.1|CO523700
EST:     CATATGACCACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAG                         GCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
genomic: CATATGACCACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAGgtatattgat ... ttgtatttagGCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
EST: gi|211305745|gb|FK970548.1|FK970548
EST:     CATATGACCACACTGGCAAGACRTTTTCAACTGCAGAGGAAATGAAAGAG                         GCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
genomic: CATATGACCACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAGgtatattgat ... ttgtatttagGCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
EST: gi|111433430|gb|EE297747.1|EE297747
EST:     CATATGACCACACTGGCAAGACATTTTCAACTGCAGAGGAAATGAAAGAG                         GCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
genomic: CATATGACCACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAGgtatattgat ... ttgtatttagGCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
EST: gi|148969157|gb|EE019898.2|EE019898
EST:     CATATGACCACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAG                         GCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
genomic: CATATGACCACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAGgtatattgat ... ttgtatttagGCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
EST: gi|32939016|gb|CF043835.1|CF043835
EST:     CATATGACCACACTGGCAAGACATTTTCAACTGCAGAGGAAATGAAAGAG                         GCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
genomic: CATATGACCACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAGgtatattgat ... ttgtatttagGCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
EST: gi|33095385|gb|CF055379.1|CF055379
EST:     CATATGACCACACTGGCAAGACATTTTCAACTGCAGAGGAAATGAAAGAG                         GCTGCTCTTGCGAGATACAAGAAGATGA-GTTTATTGCTCCGGAGAGACTA
genomic: CATATGACCACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAGgtatattgat ... ttgtatttagGCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
EST: gi|110202220|gb|EC884117.1|EC884117
EST:     AAGACATTTTCGACTGCAGAGGAAATGAAAGAG                         GCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
genomic: AAGACATTTTCGACTGCAGAGGAAATGAAAGAGgtatattgat ... ttgtatttagGCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
EST: gi|148960782|gb|EE011442.2|EE011442
EST:     CACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAG                         GCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
genomic: CACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAGgtatattgat ... ttgtatttagGCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
EST: gi|32928456|gb|CF033268.1|CF033268
EST:     CATATGACCACACTGGCAAGACATTTTCAACTGCAGAGGAAATGAAAGAG                         GCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
genomic: CATATGACCACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAGgtatattgat ... ttgtatttagGCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTGGGTGAATTCGCTTGCTTTGAGCACGGAATATGTTCTCCGTACTGGAGCATATGACCACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAGgtatattgatggcactttgttttgttgtctatcctaatagcaaattagttttggctcaagattacatataatatatgttggcctttttttttatataaatgttatgttttggaatgtttttcctcctcacctgagaaccttttgtatttag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA