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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattgatggcactttgttttgttgtctatcctaatagcaaattagttttggctcaagattacatataatatatgttggcctttttttttatataaatgttatgttttggaatgtttttcctcctcacctgagaaccttttgtatttagGCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTAGTTTCTGGTTCTGATGATTTTACAATGTTTCTTTGGGAACCAACAATTA

Basic information

species Zea mays
transcript GRMZM2G157034_T01
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211305746|gb|FK970549.1|FK970549
EST:     CATATGACCACACTGGCAAGACATTTTCAACTGCAGAGGAAATGAAAGAG                         GCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGA--CTA
genomic: CATATGACCACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAGgtatattgat ... ttgtatttagGCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
EST: gi|50328574|gb|CO523700.1|CO523700
EST:     CATATGACCACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAG                         GCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
genomic: CATATGACCACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAGgtatattgat ... ttgtatttagGCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
EST: gi|211305745|gb|FK970548.1|FK970548
EST:     CATATGACCACACTGGCAAGACRTTTTCAACTGCAGAGGAAATGAAAGAG                         GCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
genomic: CATATGACCACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAGgtatattgat ... ttgtatttagGCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
EST: gi|111433430|gb|EE297747.1|EE297747
EST:     CATATGACCACACTGGCAAGACATTTTCAACTGCAGAGGAAATGAAAGAG                         GCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
genomic: CATATGACCACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAGgtatattgat ... ttgtatttagGCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
EST: gi|148969157|gb|EE019898.2|EE019898
EST:     CATATGACCACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAG                         GCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
genomic: CATATGACCACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAGgtatattgat ... ttgtatttagGCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
EST: gi|32939016|gb|CF043835.1|CF043835
EST:     CATATGACCACACTGGCAAGACATTTTCAACTGCAGAGGAAATGAAAGAG                         GCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
genomic: CATATGACCACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAGgtatattgat ... ttgtatttagGCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
EST: gi|33095385|gb|CF055379.1|CF055379
EST:     CATATGACCACACTGGCAAGACATTTTCAACTGCAGAGGAAATGAAAGAG                         GCTGCTCTTGCGAGATACAAGAAGATGA-GTTTATTGCTCCGGAGAGACTA
genomic: CATATGACCACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAGgtatattgat ... ttgtatttagGCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
EST: gi|110202220|gb|EC884117.1|EC884117
EST:     AAGACATTTTCGACTGCAGAGGAAATGAAAGAG                         GCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
genomic: AAGACATTTTCGACTGCAGAGGAAATGAAAGAGgtatattgat ... ttgtatttagGCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
EST: gi|148960782|gb|EE011442.2|EE011442
EST:     CACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAG                         GCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
genomic: CACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAGgtatattgat ... ttgtatttagGCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
EST: gi|32928456|gb|CF033268.1|CF033268
EST:     CATATGACCACACTGGCAAGACATTTTCAACTGCAGAGGAAATGAAAGAG                         GCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA
genomic: CATATGACCACACTGGCAAGACATTTTCGACTGCAGAGGAAATGAAAGAGgtatattgat ... ttgtatttagGCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaatgttatgttttggaatgtttttcctcctcacctgagaaccttttgtatttagGCTGCTCTTGCGAGATACAAGAAGATGAGGGGTAATGCTCCGGAGAGACTAGTTTCTGGTTCTGATGATTTTACAATGTTTCTTTGGGAACCAACAATTA
                           tcctcac  putative branch site (score: 2)
                                         ccttttgt  putative PPT
                                           ttttgtattta  TA-rich tract