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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCCTCTTGGGCGTGTTATTGGTGGCACTGTCTATCCTGGTTTGACACTTACTGCTGGTACAATATGGTGgtatgtgactgccaatgcatactattagaaatgcttcattggtagatttgaactactgttagcatgactgaattgtttggttggcatag

Basic information

species Zea mays
transcript GRMZM2G154165_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G154165_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA01G01270.1 (Glycine max), 5'ss of exon 4
GTATCCTCTTGGGCGTGTTATTGGTGGCACTGTCTATCCTGGTTTGACACTTACTGCTGGTACAATATGGTGgtatgtgactgccaatgcatactattagaaatgcttcattggtagatttgaactactgttagcatgac--tgaattgtttggttggcatag------------------------------------------------------------------
|||||| || || ||||| |||||||| ||||||||||||||||||||  | || || || ||  |||||||||| |    ||  |     || | || |   |  |    ||  |  |||    |  | |||   | |   | |||      |   ||||                                                                    
GTATCCCCTCGGTCGTGTAATTGGTGGGACTGTCTATCCTGGTTTGACGTTGACAGCAGGCACCTTATGGTGgtaggcatttgaaacacagtaatgttggttgtcatatgctgtgatttttctcttcattttatactaatattaaatatccatgcaagcatttgttttgaagtttatcagtttatctaaggtggttgatatttttggaccattcccttcttggtttcag

upper sequence: GRMZM2G154165_T03 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 4
GTATCCTCTTGGGCGTGTTATTGGTGGCACTGTCTATCCTGGTTTGACACTTACTGCTGGTACAATATGGTGgtatgtgactgccaatgcatactattag-----aaatgcttcattggtagatttgaactactgttagcatgactgaattgtttggttggca-tag--------------------------------------------------------
|||||| ||||| ||||| |||||||| ||||||||||||||||||||  | || || || ||  ||||| |||| |    ||  |     || | || |     | |||||    |  |    || |  |  |  ||  |  | | |||      |   ||| | |                                                        
GTATCCCCTTGGTCGTGTAATTGGTGGGACTGTCTATCCTGGTTTGACCTTGACAGCAGGCACCTTATGGCGgtaggcatttgaaacacagtaatgttggttgtcatatgctgtgatttttctcttcattttatagtaataatattaaatatccatgcaagcaattgttttgaagtttatctaaggtgtttggtatttttggacctttcccttctggtttcag

upper sequence: GRMZM2G154165_T03 (Zea mays), 5'ss of exon 4
lower sequence: Vv11s0016g03320.t01 (Vitis vinifera), 5'ss of exon 4
GTATCCTCTTGGGCGTGTTATTGGTGGCACTGTCTATCCTGGTTTGACACTTACTGCTGGTACAATATGGTGgtatgtgactg---ccaatgcatactattag----aaatgcttcat--tggtagatttga-actactgttagcatgactgaattg--tttggttggcatag----------------------------------------------------------------------------------------------
|||||||||||| ||||| |||||||||||||| || || || |||||  | || || ||  | ||||||||||  ||   ||       ||||   | || |    |   | || ||     ||| ||||  | | || || || |  ||  ||||  |   ||||   |                                                                                                
GTATCCTCTTGGTCGTGTGATTGGTGGCACTGTTTACCCAGGATTGACCTTAACAGCAGGCTCCATATGGTGgtgggtatttgagattggtgcaacttgtttgttgcaggagattaatgccattagttttgttatttctttttgctt--ctagattgagtacagttgctcttaatcagtttccatatataatgagacattggaaatagtacctgtgaatgagtcctgtggcagctaatgattatgggccaatactttctgatggcag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71446808|gb|DR827858.1|DR827858
EST:     GGTGGCACTGTCTATCCTGGTTTGACACTTACTGCTGGTACAATATGGTG                         GTTGTTGAATTCCCTTAACATCCCATTGTCGGTGGAGACTGTCTGTGTATT
genomic: GGTGGCACTGTCTATCCTGGTTTGACACTTACTGCTGGTACAATATGGTGgtatgtgact ... gttggcatagGTTGTTGAATTCCCTTAACATCCCATTGTCGGTGGAGACTGTCTGTGTATT
EST: gi|71447977|gb|DR829027.1|DR829027
EST:     GGAGGGACTGTCTATCCTGGTTTGACACTTACTGCTGGTACAATATGGTG                         GTTGTTGAATTCCCTTAACATCCCATTGTCGGTGGAGACTGTCTGTGTATT
genomic: GGTGGCACTGTCTATCCTGGTTTGACACTTACTGCTGGTACAATATGGTGgtatgtgact ... gttggcatagGTTGTTGAATTCCCTTAACATCCCATTGTCGGTGGAGACTGTCTGTGTATT