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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatttcatttctttagatgaacaagcagtttagctagttagttttaccatgtttttgacttttgagtgattgtcattaactcaattttcagTCATGCTTCTTACCATTATCTGATGCAAGCTCATTTTTGGTCCTGTACTTGGTAACCTCAGTGTATTTCTCTGGAGTAATG

Basic information

species Zea mays
transcript GRMZM2G154165_T03
intron # 11
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19351651|gb|BM896183.1|BM896183
EST:     ATTTTATGGATATCAATGTGCTTGCCTTTTTAGTTCCTGCTGGGATCGTA                         TCATGCTTCTTACCATTATCTGATGCAAGCTCATTTTTGGTCCTGTACTTG
genomic: ATTTTATGGATATCAATGTGCTTGCCTTTTTAGTTCCTGCTGGGATCGTAgtaagtattt ... caattttcagTCATGCTTCTTACCATTATCTGATGCAAGCTCATTTTTGGTCCTGTACTTG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttagttttaccatgtttttgacttttgagtgattgtcattaactcaattttcagTCATGCTTCTTACCATTATCTGATGCAAGCTCATTTTTGGTCCTGTACTTGGTAACCTCAGTGTATTTCTCTGGAGTAATG
                                     cattaac  putative branch site (score: 2)
                                                ttttc  putative PPT
                                      attaactcaatttt  TA-rich tract