Sequence
atgc intronic sequence ATGC exonic sequence...ttatcaatttttgttatacaaccaatccatattcttccttttctttataaactgacacattgactgtttgtccttcacctttcccttttgctcctggcagAACCTATGCAAGCAAGTACATCCCTATAATTGCTAGTGTGAGCGAACACCAACCACCAACCTGGCCTTCTTATTTTATGGATATCAATGTGCTTGCCTTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G154165_T03 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA16G08410.1 (Glycine max), 3'ss of exon 12
------ttatcaatttttgttatacaaccaatccatattcttccttttctttataaactgacacattgactgtttgtccttcacctttcccttttgctcctggcagAACCTATGCAAGCAAGTACATCCCTATAATTGCTAGTGTGAGCGAACACCAACCACCAACCTGGCCTTCTTATTTTATGGATATCAATGTGCTTGCCTTT
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ctttgaaagtttacctttctttttatgtcagtctgcaattatt-ttctttttatgatttggatc--caatcctaagtacttaatttgtttgttgtgtaac---cagTACTTATGCAAGCAAGTATATACCGATCATTGCTAGTGTTAGTGAGCATCAGCCACCTACTTGGCCTTCATACTTTATGGATATCAATGTCTTGGCATTC
upper sequence: GRMZM2G154165_T03 (Zea mays), 3'ss of exon 10
lower sequence: GLYMA01G01270.1 (Glycine max), 3'ss of exon 12
-----ttatcaatttttgttatacaaccaatccatattcttccttt-tctttataaactgacacattgactgtttgtccttcacctttcccttttgctcctggcagAACCTATGCAAGCAAGTACATCCCTATAATTGCTAGTGTGAGCGAACACCAACCACCAACCTGGCCTTCTTATTTTATGGATATCAATGTGCTTGCCTTT
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aagtgtctttgaagtttacctttctttttgttagtgaaattattttctttttatgatttgggtc--caatcctaagtacttaatttgtttgttgtg----taacagTACTTATGCAAGCAAGTATATACCAATCATTGCTAGTGTTAGTGAGCATCAGCCACCTACTTGGCCTTCATACTTTATGGATATCAATGTCTTGGCATTC
upper sequence: GRMZM2G154165_T03 (Zea mays), 3'ss of exon 10
lower sequence: AT5G19690.1 (Arabidopsis thaliana), 3'ss of exon 12
-----------------------------------------ttatcaatttttgttatacaaccaatccatattcttccttttc--tttataa--actgacacat-tgactgtttgtccttcacctttcccttttgctcctggcagAACCTATGCAAGCAAGTACATCCCTATAATTGCTAGTGTGAGCGAACACCAACCACCAACCTGGCCTTCTTATTTTATGGATATCAATGTGCTTGCCTTT
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gtgagtggttctagtttttcaatctttcttctcctagccatttattttatgtctttgtccacgtttcaggtattccgctttatcattttataattattaacatacctgacactctttttctttgttttatctatcgtac--aacagAACTTATGCAAGCAAGTATATTCCAATTATTGCAAGTGTCAGTGAACATCAACCTCCAACTTGGCCATCTTATTTCATGGATATCAATGTTTTGGCTTTC
upper sequence: GRMZM2G154165_T03 (Zea mays), 3'ss of exon 10
lower sequence: Vv11s0016g03320.t01 (Vitis vinifera), 3'ss of exon 12
-----ttatcaatttttgttatacaaccaatccatattcttccttttctttataaactgacacattgactgtttgtccttcacctttcccttttgctcctggcagAACCTATGCAAGCAAGTACATCCCTATAATTGCTAGTGTGAGCGAACACCAACCACCAACCTGGCCTTCTTATTTTATGGATATCAATGTGCTTGCCTTT
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ctttattttcaaaatttgaatttctttttgctgat-ctattctattcctattagtcctga---atcagctttctgacattc-cttcttttggggagttttgacagAACTTATGCAAGCAAGTATATACCAATTATTGCCAGTGTTAGTGAACATCAACCACCTACTTGGCCATCTTACTTTATGGACATTAATGTTTTGGCATTT
upper sequence: GRMZM2G154165_T03 (Zea mays), 3'ss of exon 10
lower sequence: PP1S404_37V6.1 (Physcomitrella patens), 3'ss of exon 12
-------ttatcaatttttgttatacaaccaatccatattcttccttttctttataaactgacacattgactgtttgtccttcacctttcccttttgctcctggcagAACCTATGCAAGCAAGTACATCCCTATAATTGCTAGTGTGAGCGAACACCAACCACCAACCTGGCCTTCTTATTTTATGGATATCAATGTGCTTGCCTTT
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acgattgctatgaatgtctgttatgcc-tggataaaaagtagtttgtgtttcacttggctgacttcccgactgtg-attgttggtgtgacgctgatgttc-----agAACCTATGCAAGCAAGTATATCCCAATCATTGCTAGTGTTAGCGAGCATCAGCCACCCACCTGGCCTTCGTATTTCATGGACATCAACATTTTGGCCTTC
upper sequence: GRMZM2G154165_T03 (Zea mays), 3'ss of exon 10
lower sequence: EFJ15189 (Selaginella moellendorffii), 3'ss of exon 12
ttatcaatttttgttatacaaccaatccatattcttccttttctttataaactgacacattgactgtttgtccttcacctttcccttttgctcctggcagAACCTATGCAAGCAAGTACATCCCTATAATTGCTAGTGTGAGCGAACACCAACCACCAACCTGGCCTTCTTATTTTATGGATATCAATGTGCTTGCCTTT
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--------------------------------------gtaagcttttacgttgtttc-ctaaaggtcggtggtaatgttttttctttttctgacg-cagGACTTATGCGAGCAAGTACATTCCTATAATAGCCAGTGTCAGTGAACATCAGCCGCCGACATGGCCATCCTACTTTATGGATATCAATGTGCTCGCTTTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19351651|gb|BM896183.1|BM896183EST: TCTAGCCCAACAAAAGGCTGGAGTGGTCGCAGTTTGAGTCTGCTGGATCC AACCTATGCAAGCAAGTACATCCCTATAATTGCTAGTGTGAGCGAACACCA
genomic: TCTAGCCCAACAAAAGGCTGGAGTGGTCGCAGTTTGAGTCTGCTGGATCCgtaagtcctt ... ctcctggcagAACCTATGCAAGCAAGTACATCCCTATAATTGCTAGTGTGAGCGAACACCA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tataaactgacacattgactgtttgtccttcacctttcccttttgctcctggcagAACCTATGCAAGCAAGTACATCCCTATAATTGCTAGTGTGAGCGAACACCAACCACCAACCTGGCCTTCTTATTTTATGGATATCAATGTGCTTGCCTTT
ctgtttgtccttcacc CT-rich tract