Sequence
atgc intronic sequence ATGC exonic sequenceGGCTGTTTGTTTTGCTGCTGCAGCAATACTCATTGCATTGATTGCATCTAGCCCAACAAAAGGCTGGAGTGGTCGCAGTTTGAGTCTGCTGGATCCgtaagtccttatcaaattatcattgttagttgaactgttgagctcttgatgttctgttgcaaagtaagatctcaaatttggtctttaggaacacaaactt...
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G154165_T03 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 12
GGCTGTTTGTTTTGCTGCTGCAGCAATACTCATTGCATTGATTGCATCTAGCCCAACAAAAGGCTGGAGTGGTCGCAGTTTGAGTCTGCTGGATCCgtaagtcctta--tcaaattatcatt-gttagttgaactgttgagc---tcttgatgttctgttgcaaagtaagatctcaaatttggtctttaggaacacaaactt
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GGCAGTGTGTTGCGCAATGGTGGCAGTACTTATAGCATTGGTAGCTTCAAGCCCAACAAAAGGATGGAGTGGAAGAAGTTTAAGTCTGCTTGATCCgtaagtgttttgtttgcaatattatttaccattcaaattcttaaaaaaatgttgaaataatttttccacctaaaat--gatattctatgattaaggtgattg----
upper sequence: GRMZM2G154165_T03 (Zea mays), 5'ss of exon 10
lower sequence: GLYMA01G01270.1 (Glycine max), 5'ss of exon 12
GGCTGTTTGTTTTGCTGCTGCAGCAATACTCATTGCATTGATTGCATCTAGCCCAACAAAAGGCTGGAGTGGTCGCAGTTTGAGTCTGCTGGATCCgtaagtccttatcaaattatcattgttagttgaactgttga----gctcttgatgttctgttgcaaagtaagatctcaaatttggtctttaggaacacaaactt
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TGCAGTGTGTTGTGCAATGGTGGCAGTACTTGTAGCATTGGTAGCTTCAAGCCCAACAAAAGGATGGAGTGGAAGAAGTTTAAGTCTGCTTGATCCgtaagtgttgtgttttcaatatttatcattcaaattcttaaaaaagatgttaaaataaatttttcacctaaaat--gatattctgtgattaaggtgattgtt--
upper sequence: GRMZM2G154165_T03 (Zea mays), 5'ss of exon 10
lower sequence: Vv11s0016g03320.t01 (Vitis vinifera), 5'ss of exon 12
GGCTGTTTGTTTTGCTGCTGCAGCAATACTCATTGCATTGATTGCATCTAGCCCAACAAAAGGCTGGAGTGGTCGCAGTTTGAGTCTGCTGGATCCgtaagtc-cttatcaaattatcattgttagttgaactgttgagctcttgatgttctgttgcaaagtaagatctcaaatt--tggtctttaggaacacaaactt
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GGTGGTGTGTTGTGCTGTGGTAGCAGTACTTATAGCACTGGTAGCTTCCAGCCCAACAAAGGGATGGAGTGGACGAAGTTTGAGTCTCCTTGATCCgtaagttacttgtctctcaattgatgtct-taatgtttttaatgacttcattctttgtgaatgaatgaactgtaataataatagaattcacaattgggggg--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19351651|gb|BM896183.1|BM896183EST: TCTAGCCCAACAAAAGGCTGGAGTGGTCGCAGTTTGAGTCTGCTGGATCC AACCTATGCAAGCAAGTACATCCCTATAATTGCTAGTGTGAGCGAACACCA
genomic: TCTAGCCCAACAAAAGGCTGGAGTGGTCGCAGTTTGAGTCTGCTGGATCCgtaagtcctt ... ctcctggcagAACCTATGCAAGCAAGTACATCCCTATAATTGCTAGTGTGAGCGAACACCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GGCTGTTTGTTTTGCTGCTGCAGCAATACTCATTGCATTGATTGCATCTAGCCCAACAAAAGGCTGGAGTGGTCGCAGTTTGAGTCTGCTGGATCCgtaagtccttatcaaattatcattgttagttgaactgttgagctcttgatgttctgttgcaaagtaagatctcaaatttggtctttaggaacacaaactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA