Sequence
atgc intronic sequence ATGC exonic sequencegtaaaaccctttagcatggaacattatcatactgcagtacaatgctggttgctggtctttttattaatctgtatgttattgcaatgatagGTCCGACTTATGCTGGTCCTTGCTCCTGCTGCATGCATTTTGTCTGGGATTGCTCTGTCTGAAGCTTTTGGTGTCCTTACAAGATCAATGAAATTTCAGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G154165_T03 (Zea mays), 3'ss of exon 12
lower sequence: GLYMA16G08410.1 (Glycine max), 3'ss of exon 14
gtaaaaccctttagcatggaacattatcatactgcagtacaatgctggttgctggtctttttattaatctgtatgttattgc--aatgatagGTCCGACTTATGCTGGTCCTTGCTCCTGCTGCATGCATTTTGTCTGGGATTGCTCTGTCTGAAGCTTTTGGTGTCCTTACAAGATCAATGAAATTTCAGC
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-------------gtaagaataataatggagttttttcttactattgcatttttattattttattgagg-acataatcttgctgaatatcagGTTCGCTTGATGCTCGTACTTGCTCCAGCTGCATGTATTTTGTCTGGGATTGCTCTTTCTCAGGCTTTTGATGTTTTCACAAGATCTATTAAGTTGCAGT
upper sequence: GRMZM2G154165_T03 (Zea mays), 3'ss of exon 12
lower sequence: GLYMA01G01270.1 (Glycine max), 3'ss of exon 14
gtaaaaccctttagcatggaacattatcatactgcagtacaatgctggttgctggtctttttattaatctgtatgttattgcaatgatagGTCCGACTTATGCTGGTCCTTGCTCCTGCTGCATGCATTTTGTCTGGGATTGCTCTGTCTGAAGCTTTTGGTGTCCTTACAAGATCAATGAAATTTCAGC
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gtaagaataataatggaggaggtttttcttactattgcat-------ttttattattttattgaggacata-atcctgctg-aatatcagGTTCGCTTGATGCTTGTACTTGCTCCAGCAGCATGTATCTTGTCTGGGATTGCTCTTTCTCAGGCTTTTGATGTTTTCACAAGATCTATTAAGTTGCAGT
upper sequence: GRMZM2G154165_T03 (Zea mays), 3'ss of exon 12
lower sequence: AT5G19690.1 (Arabidopsis thaliana), 3'ss of exon 14
gtaaaaccctttagcatggaacattatcata-----ctgcagtacaatgctggttgctggtctttttattaatctgtatgttattgcaatgatagGTCCGACTTATGCTGGTCCTTGCTCCTGCTGCATGCATTTTGTCTGGGATTGCTCTGTCTGAAGCTTTTGGTGTCCTTACAAGATCAATGAAATTTCAGC
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gtaagttgtgtgtctatgaattgccgttgcatctttctgttgcctagttatt-ttattgaaccatgtattcacctgtct--tcctgttctcttagGTTCGTCTTATGCTCGTGCTTGCTCCAGCAGCATGCATCATGTCTGGGATTGCGCTCTCTCAAGCTTTTGATGTTTTCACGGGTTCCATCAAATACCAGTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|19351651|gb|BM896183.1|BM896183EST: CATTTTTGGTCCTGTACTTGGTAACCTCAGTGTATTTCTCTGGAGTAATG GTCCGACTTATGCTGGTCCTTGCTCCTGCTGCATGCATTTTGTCTGGGATT
genomic: CATTTTTGGTCCTGTACTTGGTAACCTCAGTGTATTTCTCTGGAGTAATGgtaaaaccct ... gcaatgatagGTCCGACTTATGCTGGTCCTTGCTCCTGCTGCATGCATTTTGTCTGGGATT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.agtacaatgctggttgctggtctttttattaatctgtatgttattgcaatgatagGTCCGACTTATGCTGGTCCTTGCTCCTGCTGCATGCATTTTGTCTGGGATTGCTCTGTCTGAAGCTTTTGGTGTCCTTACAAGATCAATGAAATTTCAGC
tattaat putative branch site (score: 2)
tttttattaatctgta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaaaccctttagcatggaacattatcatactgcagtacaatgctggttgctggtctttttattaatctgtatgttattgcaatgatagGTCCGACTTATGCTGGTCCTTGCTCCTGCTGCATGCATTTTGTCTGGGATTGCTCTGTCTGAAGCTTTTGGTGTCCTTACAAGATCAATGAAATTTCAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA