Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   		20  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGGAAGCGTAGATCGCCTCCGCAACGCCTTCGGCGGAGTGCTGTGCATCTTCACCCTCCTTCTCATCGGCGTCCTCGCCTTCTCCATCCGACTATTCTCCgtaagatctatccgaaccccaccatttttaaatccttttgggaattgggaatcccaacatggtttgcccgggcccatgcctgtcttactggtccgttgatgtgccgcag

Basic information

species Zea mays
transcript GRMZM2G154165_T03
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G154165_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA16G08410.1 (Glycine max), 5'ss of exon 1
CGGAAGCGTAGATCGCCTCCGCAACGCCTTCGGCGGAGTGCTGTGCATCTTCACCCTCCTTCTCATCGGCGTCCTCGCCTTCTCCATCCGACTATTCTCCgtaag-atctatccgaaccccaccatttttaaatccttttgggaattgggaatcccaacat--ggtttgcccgggcccatgcctgtcttactggtccgttgatgtgccgcag
|  || |        | || |  |||| ||||||   || ||     ||||||  || ||  | |||||||| ||||||||||| ||||| || ||||||||||| || | |||  |  || |   | |     |||        ||  |  ||| |   |  | |||  |   ||   ||| ||  |   |  || |              
CACAACCACCACCTCCATCAGGCACGCGTTCGGCAACGTCCTCGCGTTCTTCATACTTCTCATGATCGGCGTTCTCGCCTTCTCGATCCGTCTCTTCTCCgtaagcatttttcctcattccgcagatctggttacctgaacctcgtttcggttccgacttttcgttttctcaacgcgattgcatgcttctatattcagcg------------

upper sequence: GRMZM2G154165_T03 (Zea mays), 5'ss of exon 1
lower sequence: GLYMA01G01270.1 (Glycine max), 5'ss of exon 1
CGGAAGCGTAGATCGCCTCCGCAACGCCTTCGGCGGAGTGCTGTGCATCTTCACCCTCCTTCTCATCGGCGTCCTCGCCTTCTCCATCCGACTATTCTCCgtaag-atctatccgaaccccaccattttta------aatccttttgggaattgggaatcccaacatggtttgcccgggcccatgcctgtcttactggtccgttgatgtgccgcag
|   | |    |   | || |  |||||||||||   || ||     |||||| ||| || ||||||||||| || |||||||| ||||| || ||||||||||| || | |||  |  || |   | |         | |||  |     ||  || |       |  ||  | ||    ||||| | |       | |                
CACCACCACCAACTCCATCAGGCACGCCTTCGGCAACGTCCTCGCGTTCTTCATCCTTCTCCTCATCGGCGTTCTGGCCTTCTCGATCCGTCTCTTCTCCgtaagcatttctcctcattccgcagatctggttacctgaacctcgttccggttccgagttttcgttttcttaacacgattgcatgcttctaaattcagcc----------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71446808|gb|DR827858.1|DR827858
EST:     TCACCCTCCTTCTCATCGGCGTCCTCGCCTTCTCCATCCGACTATTCTCC                         GTGATCAAATACGAAAGCGTCATCCACGAGTTCGATCCCTACTTCAATTAC
genomic: TCACCCTCCTTCTCATCGGCGTCCTCGCCTTCTCCATCCGACTATTCTCCgtaagatcta ... tgtgccgcagGTGATCAAATACGAAAGCGTCATCCACGAGTTCGATCCCTACTTCAATTAC
EST: gi|71447977|gb|DR829027.1|DR829027
EST:     TCACCCTCCTTCTCATCGGCGTCCTCGCCTTCTCCATCCGACTATTCTCC                         GTGATCAAATACGAAAGCGTCATCCACGAGTTCGATCCCTACTTCAATTAC
genomic: TCACCCTCCTTCTCATCGGCGTCCTCGCCTTCTCCATCCGACTATTCTCCgtaagatcta ... tgtgccgcagGTGATCAAATACGAAAGCGTCATCCACGAGTTCGATCCCTACTTCAATTAC