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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGACTGCCCCACCTAGGCCCACTGCGGTTTCATTTTCTCCACTTCTAAATGTACATGAGGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAGgtaagttgtttgatttttaacgtaatacaagttattttaataaatgctactgttttttgaagtctgggggagtgttgttatatcatgtcagattatataaaagtaaaacaaactatagaatacaagtttttctttggttcttttatttattggctgatgtacagtatatgcttctag

Basic information

species Zea mays
transcript GRMZM2G151050_T01
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151050_T01 (Zea mays), 5'ss of exon 9
lower sequence: LOC_Os11g09329.1 (Oryza sativa), 5'ss of exon 9
GGACTGCCCCACCTAGGCCCACTGCGGTTTCATTTTCTCCACTTCTAAATGTA---CATGAGGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAGgtaagttgt-ttgatttttaacgtaa--------tacaagttattt-taataaatgctactgtt-ttttgaagtctgggggagtgttgttatatcatgtcagattatataaaagtaaaacaaactatagaatacaagtttttctttggttcttttatttattggctgatgtacagtatatgcttctag
   | ||||| |||||||| |||| |||||||||||| |||||||| |||||    ||||| |||||||| |||||||||||||||||||| |||||||||||| ||| | | ||  ||||     | |        ||| | |||||| | ||| |||||| || | || | |  | |||  |  ||| |  | ||||  |                                                                                         
---CAGCCCCTCCTAGGCCTACTGGGGTTTCATTTTCCCCACTTCTTAATGTGCACCATGAAGACGATGAGCCAGAAGACGAGTTCTCTGTTCTTTCCCGCAGgcaagctatattagttttccctattagtaccctttactaattatttctcatacatgctattgctattctaagctttggatggttgtggcaacatcagctg----------------------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12971911|gb|BG267719.1|BG267719
EST:     GTACATGAGGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAG                         GTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAG
genomic: GTACATGAGGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAGgtaagttgtt ... atgcttctagGTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAG
EST: gi|4647309|gb|AI622384.1|AI622384
EST:     GTACATGAGGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAG                         GTCTGCGAGGGATGGNGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAG
genomic: GTACATGAGGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAGgtaagttgtt ... atgcttctagGTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAG
EST: gi|4681182|gb|AI629852.1|AI629852
EST:     GTACATGAGGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAG                         GTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAG
genomic: GTACATGAGGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAGgtaagttgtt ... atgcttctagGTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAG
EST: gi|47962013|gb|CN844722.1|CN844722
EST:     GGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCCG                         GTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAG
genomic: GGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAGgtaagttgtt ... atgcttctagGTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAG
EST: gi|83279170|gb|DV943178.1|DV943178
EST:     GTACATGAGGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAG                         GTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAG
genomic: GTACATGAGGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAGgtaagttgtt ... atgcttctagGTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAG
EST: gi|78085645|gb|DV514038.1|DV514038
EST:     GTACATGAGGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAG                         GTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAG
genomic: GTACATGAGGACGATGAACCAGAAGACGAGTTCTCTGTGCTTTCCCGCAGgtaagttgtt ... atgcttctagGTCTGCGAGGGATGGTGCAGTAGCACAGAACAATGTGCCCTCTGCTCCAAG