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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaccatcagcttttgttaccaaactctttctttgccctgttcttatatttatatatgtgtggtcatggaatctaaattttctagtttgtactgtttcccattttcatgtttgtttgattccatcttttctgagttttgactgcatcttttattagttagctgaatcttgattagtacattgctatcaaaaattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTTACACCACCTCAAACTCAACCATTAAGACATCCACATCTATATACACCTC

Basic information

species Zea mays
transcript GRMZM2G151050_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151050_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os11g09329.2 (Oryza sativa), 3'ss of exon 5
gtaccatcagcttttgttaccaaactctttctttgccctgttcttatatttatatatgtgtggtcatggaatctaaattttctagtttgtactgtttcccattttcatgtttgtttgattccatcttttctgagttttgactgcatcttttattagttagctgaatcttgattagtacattgctatcaaaaattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTTACACCACCTCAAACTCAACCATTAAGACATCCACATCTATATACACCTC
                                                                                         |      |   || ||||     ||||  || | | |    | |  ||  | ||| ||| ||  |    |    || | |||  |  | ||  ||  |      | |||||  |||||||||||||||||| ||||| ||||| ||  | || ||  |||||||||| ||||||||||||||||| || || |||||||||||| ||||||
----------------------------------------------------------------------------------------atgtaaacttagatcttcaa---cgttt--ttacttttgagttaatattcaattgcttctgtttctgtcca----aaccatgaacaagatatc-ctgcccttg--tgtgcagAATGCTGGTGTTGATTTTCCACCTCGTGAGGAGAACACGGTTCCACTGTTTACACCTCCTCAAACTCAACCATTGAGGCAACCACATCTATATCCACCTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148954553|gb|EC899991.2|EC899991
EST:     GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGG                         GCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
genomic: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcag ... aattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
EST: gi|149100088|gb|EE186140.2|EE186140
EST:     GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGG                         GCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
genomic: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcag ... aattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
EST: gi|91871540|gb|EB401497.1|EB401497
EST:     GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGG                         GCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
genomic: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcag ... aattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
EST: gi|93012296|gb|EB637816.1|EB637816
EST:     GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGG                         GCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
genomic: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcag ... aattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
EST: gi|89247370|gb|DY619156.1|DY619156
EST:     GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGG                         GCTGCTGGTGTTGATTTTTCGCCTCGCGAGGAAAAATCAGTCCCGTTGTTT
genomic: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcag ... aattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
EST: gi|91876199|gb|EB406156.1|EB406156
EST:     GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGG                         GCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
genomic: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcag ... aattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
EST: gi|74233431|gb|DT641345.1|DT641345
EST:     GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGG                         GCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
genomic: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcag ... aattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
EST: gi|93013764|gb|EB639284.1|EB639284
EST:     GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGG                         GCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
genomic: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcag ... aattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
EST: gi|148962190|gb|EE013005.2|EE013005
EST:     GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGG                         GCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
genomic: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcag ... aattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
EST: gi|149106511|gb|EE188403.2|EE188403
EST:     GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGG                         GCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
genomic: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcag ... aattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
EST: gi|71449169|gb|DR830219.1|DR830219
EST:     GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGG                         GCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAA-TTCAGTCCCGTTGTTT
genomic: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcag ... aattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcttttattagttagctgaatcttgattagtacattgctatcaaaaattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTTACACCACCTCAAACTCAACCATTAAGACATCCACATCTATATACACCTC
                    tcttgat  putative branch site (score: 4)
                                      tatcaaaaatttt  TA-rich tract