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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAATGTTAAATGCTCTGGACCACCGGCATCCTGAGgtgacttcttataaagcattaagttttagaatgtttcagtacaatccttggatcacttctatagttttattttgtcacattcagtacaagctattttgta...

Basic information

species Zea mays
transcript GRMZM2G151050_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151050_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os11g09329.1 (Oryza sativa), 5'ss of exon 7
TCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAATGTTAAATGCTCTGGACCACCGGCATCCTGAGgtgacttcttataaagcattaagttttagaatgtttcagtacaatccttggatcacttctatagttttattttgtcacattcagtacaagctattttgta--
||| ||||||||||| || |||||||| |||||||||||||| ||||| |||||||||||| |||||||| |||| ||||||||||||| ||   |||||| ||  |||||     |   ||| |||||||| ||| ||||| ||||||  |||  |   |     |  ||  |  ||   |  
TCTAAGTGAGATTCAGAGTGCTCGAGGAATTGTGGATGTGTTGGATGAGATGTTAAATGCTTTGGACCACAGGCACCCTGAGgtgactttttt--aagcatcaaaatttagtgcagtgttgtataatccttgtatctcttctgtagtttcttttacttttaagagctttaatatgattgtcatg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|12968050|gb|BG264997.1|BG264997
EST:     TGGATGTGTTAGATGAAATGTTAAATGCTCTGGACCACCGGCATCCTGAG                         GGTGTAAGGGAGGAGGTCATTGTTGACCTTGTTGGCCAGTGCCGATCCTAT
genomic: TGGATGTGTTAGATGAAATGTTAAATGCTCTGGACCACCGGCATCCTGAGgtgacttctt ... catattgtagGGTGTAAGGGAGGAGGTCATTGTTGACCTTGTTGGCCAGTGCCGATCCTAT
EST: gi|78085645|gb|DV514038.1|DV514038
EST:     TGGATGTGTTAGATGAAATGTTAAATGCTCTGGACCACCGGCATCCTGAG                         GGTGTAAGGGAGGAGGTCATTGTTGACCTTGTTGGCCAGTGCCGATCCTAT
genomic: TGGATGTGTTAGATGAAATGTTAAATGCTCTGGACCACCGGCATCCTGAGgtgacttctt ... catattgtagGGTGTAAGGGAGGAGGTCATTGTTGACCTTGTTGGCCAGTGCCGATCCTAT