1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CCGAGAGAAGATATTGAGTTTGATTGACACATGGCAAGTGGCTTTTGGAGGTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcagcttttgttaccaaactctttctttgccctgttcttatatttatatatgtgtggtcatggaatctaaattttctagtttgtactgtttcccattttcatgtttgtttgattccatcttttctgagttttgactgcatcttttattagttagctgaatcttgattagtacattgctatcaaaaattttgcag
species | Zea mays |
transcript | GRMZM2G151050_T01 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGG GCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTTEST: gi|149100088|gb|EE186140.2|EE186140
genomic: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcag ... aattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
EST: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGG GCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTTEST: gi|91871540|gb|EB401497.1|EB401497
genomic: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcag ... aattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
EST: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGG GCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTTEST: gi|93012296|gb|EB637816.1|EB637816
genomic: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcag ... aattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
EST: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGG GCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTTEST: gi|89247370|gb|DY619156.1|DY619156
genomic: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcag ... aattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
EST: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGG GCTGCTGGTGTTGATTTTTCGCCTCGCGAGGAAAAATCAGTCCCGTTGTTTEST: gi|91876199|gb|EB406156.1|EB406156
genomic: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcag ... aattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
EST: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGG GCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTTEST: gi|74233431|gb|DT641345.1|DT641345
genomic: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcag ... aattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
EST: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGG GCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTTEST: gi|93013764|gb|EB639284.1|EB639284
genomic: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcag ... aattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
EST: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGG GCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTTEST: gi|148962190|gb|EE013005.2|EE013005
genomic: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcag ... aattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
EST: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGG GCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTTEST: gi|149106511|gb|EE188403.2|EE188403
genomic: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcag ... aattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
EST: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGG GCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTTEST: gi|71449169|gb|DR830219.1|DR830219
genomic: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcag ... aattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
EST: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGG GCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAA-TTCAGTCCCGTTGTTT
genomic: GTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcag ... aattttgcagGCTGCTGGTGTTGATTTTCCGCCTCGCGAGGAAAATTCAGTCCCGTTGTTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGAGAGAAGATATTGAGTTTGATTGACACATGGCAAGTGGCTTTTGGAGGTCCATCTGGAAAATATCGACAGTATCATGCGGCTTACCAAGAACTCAGGgtaccatcagcttttgttaccaaactctttctttgccctgttcttatatttatatatgtgtggtcatggaatctaaattttctagtttgtactgtttcccattttcatgtttgtttgattccatcttttctgagttttgactgcatcttttattagttagctgaatcttgattagtacattgctatcaaaaattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC