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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ataccgtggaagttttttcactgttaatagtttttatttcacaaaatctttgcagtgtgatattagttttatttattttctgcgtcattattttttacagTCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAATGTTAAATGCTCTGGACCACCGGCATCCTGAG

Basic information

species Zea mays
transcript GRMZM2G151050_T01
intron # 6
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G151050_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os11g09329.1 (Oryza sativa), 3'ss of exon 6
ataccgtggaagttttttcactgttaatagtttttatttcacaaaatctttgcagtgtga---tattagtttta-------tttattttctgcgtcattattttttacagTCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAATGTTAAATGCTCTGGACCACCGGCATCCTGAG
      || |   ||      |||| ||   ||| ||||||| |  |||||||||    |     |||||| ||       |||| ||  ||| || || |   ||||||||| ||||||||||| || |||||||| |||||||||||||| ||||| |||||||||||| |||||||| |||| ||||||
------tgaatacttcaattgtgtttatcaattt-atttcacca--tctttgcagaagaaattctttagttataatccacctttaattcttgc-tccttgtgcattacagTCTAAGTGAGATTCAGAGTGCTCGAGGAATTGTGGATGTGTTGGATGAGATGTTAAATGCTTTGGACCACAGGCACCCTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|148954553|gb|EC899991.2|EC899991
EST:     GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAG                         TCTGAGTGAGATTCAAAGCGCTCGAGG
genomic: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtctttt ... ttttttacagTCTGAGTGAGATTCAAAGCGCTCGAGG
EST: gi|149100088|gb|EE186140.2|EE186140
EST:     GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAG                         TCTGAGTGAGAT-CAAAGCGCTCGA
genomic: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtctttt ... ttttttacagTCTGAGTGAGATTCAAAGCGCTCGA
EST: gi|91871540|gb|EB401497.1|EB401497
EST:     GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAG                         G
genomic: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtctttt ... ttttttacag-
EST: gi|91871540|gb|EB401497.1|EB401497
EST:     GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAG                         G
genomic: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtctttt ... ttttttacag-
EST: gi|93012296|gb|EB637816.1|EB637816
EST:     GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAG                         TCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAAT
genomic: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtctttt ... ttttttacagTCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAAT
EST: gi|91876199|gb|EB406156.1|EB406156
EST:     GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAG                         TCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAAT
genomic: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtctttt ... ttttttacagTCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAAT
EST: gi|74233431|gb|DT641345.1|DT641345
EST:     GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAG                         TCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAAT
genomic: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtctttt ... ttttttacagTCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAAT
EST: gi|12968050|gb|BG264997.1|BG264997
EST:     GCTGCTATACAAGCTT-TCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAG                         TCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAAT
genomic: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtctttt ... ttttttacagTCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAAT
EST: gi|93013764|gb|EB639284.1|EB639284
EST:     GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAG                         TCTGAGTGAGATTCAAAG
genomic: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtctttt ... ttttttacagTCTGAGTGAGATTCAAAG
EST: gi|148962190|gb|EE013005.2|EE013005
EST:     GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAG                         TCTGAGTGAGAT-CAAAGCGCTCGAGGGATTGTGGATGTGTTTAGATGAAT
genomic: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtctttt ... ttttttacagTCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTT-AGATGAAA
EST: gi|149106511|gb|EE188403.2|EE188403
EST:     GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAG                         TCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAAT
genomic: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtctttt ... ttttttacagTCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctttgcagtgtgatattagttttatttattttctgcgtcattattttttacagTCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAATGTTAAATGCTCTGGACCACCGGCATCCTGAG
                                          ttatttttt  CT-rich tract
          tgtgatattagtttta  TA-rich tract