1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CATTAAGACATCCACATCTATATACACCTCCAGGTCAAAGCTATGAAGATGCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtcttttatgtgcttaccaatgtgatttctgagctctagcctttctgatttagtttcttttgtatcgaggagtcaccatttatgtttaatgtccaag...
species | Zea mays |
transcript | GRMZM2G151050_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAG TCTGAGTGAGATTCAAAGCGCTCGAGGEST: gi|149100088|gb|EE186140.2|EE186140
genomic: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtctttt ... ttttttacagTCTGAGTGAGATTCAAAGCGCTCGAGG
EST: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAG TCTGAGTGAGAT-CAAAGCGCTCGAEST: gi|91871540|gb|EB401497.1|EB401497
genomic: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtctttt ... ttttttacagTCTGAGTGAGATTCAAAGCGCTCGA
EST: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAG GEST: gi|91871540|gb|EB401497.1|EB401497
genomic: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtctttt ... ttttttacag-
EST: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAG GEST: gi|93012296|gb|EB637816.1|EB637816
genomic: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtctttt ... ttttttacag-
EST: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAG TCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAATEST: gi|91876199|gb|EB406156.1|EB406156
genomic: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtctttt ... ttttttacagTCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAAT
EST: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAG TCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAATEST: gi|74233431|gb|DT641345.1|DT641345
genomic: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtctttt ... ttttttacagTCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAAT
EST: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAG TCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAATEST: gi|12968050|gb|BG264997.1|BG264997
genomic: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtctttt ... ttttttacagTCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAAT
EST: GCTGCTATACAAGCTT-TCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAG TCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAATEST: gi|93013764|gb|EB639284.1|EB639284
genomic: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtctttt ... ttttttacagTCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAAT
EST: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAG TCTGAGTGAGATTCAAAGEST: gi|148962190|gb|EE013005.2|EE013005
genomic: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtctttt ... ttttttacagTCTGAGTGAGATTCAAAG
EST: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAG TCTGAGTGAGAT-CAAAGCGCTCGAGGGATTGTGGATGTGTTTAGATGAATEST: gi|149106511|gb|EE188403.2|EE188403
genomic: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtctttt ... ttttttacagTCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTT-AGATGAAA
EST: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAG TCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAAT
genomic: GCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtctttt ... ttttttacagTCTGAGTGAGATTCAAAGCGCTCGAGGGATTGTGGATGTGTTAGATGAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATTAAGACATCCACATCTATATACACCTCCAGGTCAAAGCTATGAAGATGCTGCTATACAAGCTTCTCTTCAGTCTGCCCCTCCTGCATCTGCCCTCAGgttgtcttttatgtgcttaccaatgtgatttctgagctctagcctttctgatttagtttcttttgtatcgaggagtcaccatttatgtttaatgtccaag
- - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT